SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene99441

Length: 903 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene99441 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CAX n=1 Tax=Suaeda salsa RepID=Q6R2R4_SUASA	-	-	0.0	50%
FL-Next	sp=Vacuolar cation/proton exchanger 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%
Sma3	Ca2+ antiporter/cation exchanger	-	-	9.831e-21	-

Source	Gene names
Sma3	AT2G38170; ATEM1.11; At1g55720; At1g55730; At2g38170; At3g13320; At3g51860; At5g01490; B1144D11.14; CAX; CAX1; CAX1a; CAX1b; CAX1c; CAX2; CAX3; CAX4; CAX5; CAX6; F16M14.10; F20N2.13; F20N2.23; F7A7.10; GSVIVT00021505001; GSVIVT00024105001; GSVIVT000290440

Source	GOs	Term	Type	Identity
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plant-type vacuole membrane	GO:0009705	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	cation transmembrane transporter activity	GO:0008324	Molecular Function	-
Sma3	calcium ion transmembrane transporter activity	GO:0015085	Molecular Function	-
Sma3	antiporter activity	GO:0015297	Molecular Function	-
Sma3	calcium:cation antiporter activity	GO:0015368	Molecular Function	-
Sma3	calcium:hydrogen antiporter activity	GO:0015369	Molecular Function	-
Sma3	phosphorus metabolic process	GO:0006793	Biological Process	-
Sma3	cation transport	GO:0006812	Biological Process	-
Sma3	sodium ion transport	GO:0006814	Biological Process	-
Sma3	calcium ion transport	GO:0006816	Biological Process	-
Sma3	manganese ion transport	GO:0006828	Biological Process	-
Sma3	cellular calcium ion homeostasis	GO:0006874	Biological Process	-
Sma3	cellular zinc ion homeostasis	GO:0006882	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	cold acclimation	GO:0009631	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	lithium ion transport	GO:0010351	Biological Process	-
Sma3	cadmium ion transport	GO:0015691	Biological Process	-
Sma3	cellular manganese ion homeostasis	GO:0030026	Biological Process	-
Sma3	response to calcium ion	GO:0051592	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Calcium/proton exchanger	IPR004713	-	-
Sma3	Calcium/proton exchanger superfamily	IPR004798	-	-
Sma3	Sodium/calcium exchanger membrane region	IPR004837	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G38170.3	-	53%
RefSeq	Arabidopsis thaliana	NP_850292.2	vacuolar cation/proton exchanger 1 [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002309138.1	Ca2+ antiporter/cation exchanger [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q39253

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 147 aas, atg_distance in limit (1-15): atg_distance = 14, W2: There is no M at the beginning, your sequence is shorter than subject: 294 - 463

Fln protein: AAFASIDAKAAGKEIYEQKDIESAHNRSSTSLRRASQKQLCLIIRYKWLRLLLCNLYEVILGTKLSFLFPLVPLAIAADRLQLGNVWVFIISLIGLAPLAERLGFVTEQIAFYTGPTVGGLLNATCGNATEMLIAVFALYHGKTNVVKYSLLGSVLSNLLLVLGTSLFCGGLANMKKEQRFDKVISGINSSLLMMASLCLMLPLALQQSMAYSEAAVSTLQLSRVSSIIMLIAYAAYLFFQLRTHRQLFEEGQETKGEEDVEEHIHRMHKFYCLALHADCCYLPAFSVYCRDH*

Protein Length: 295

Fln nts: GCGGCTTTTGCATCAATTGATGCAAAAGCCGCAGGCAAGGAGATCTACGAGCAGAAAGACATAGAATCGGCCCACAATCGCTCTTCTACTTCTCTGAGACGAGCAAGCCAGAAGCAACTCTGTTTAATAATCAGATACAAGTGGCTGAGATTGCTCTTATGTAATCTATATGAAGTCATTCTGGGAACCAAATTAAGCTTCTTGTTTCCTCTAGTGCCTTTGGCTATTGCAGCAGACAGACTTCAACTAGGAAATGTTTGGGTGTTCATTATAAGTTTGATTGGTCTAGCACCTCTTGCTGAACGTCTAGGTTTTGTCACCGAACAAATTGCATTCTACACTGGACCAACAGTTGGCGGGCTGCTCAATGCCACGTGTGGCAATGCAACAGAAATGCTCATTGCAGTGTTTGCACTTTACCATGGAAAGACCAATGTGGTCAAGTATTCTCTACTGGGGTCTGTACTTTCCAACTTACTTCTTGTGCTTGGTACATCTCTTTTCTGTGGTGGATTAGCAAACATGAAAAAAGAGCAGAGGTTTGACAAGGTTATTTCTGGAATCAACTCCAGTCTTCTTATGATGGCTTCACTGTGTCTCATGCTACCCTTGGCTCTTCAACAATCTATGGCATATAGTGAAGCAGCCGTATCAACATTACAACTGTCTAGAGTCAGCAGCATCATCATGCTGATAGCTTATGCTGCATATTTGTTCTTCCAATTAAGGACACACAGACAACTGTTTGAAGAAGGCCAGGAAACAAAAGGAGAAGAAGACGTGGAAGAACACATTCATAGGATGCATAAGTTCTATTGTCTGGCTCTGCACGCTGACTGTTGTTATCTCCCTGCTTTCTCAGTATATTGTCGAGACCATTGAGGACGTAGCAGAATCATGGGA

Fln Alignment:

AllPine_a_c21953___SIDAKAAGKEIYEQKDIESAHNRSSTSLRRASQKQLCLIIRYKWLRLLLCNLYEVILGTKLSFLFPLVPLAIAADRLQLGNVWVFIISLIGLAPLAERLGFVTEQIAFYTGPTVGGLLNATCGNATEMLIAVFALYHGKTNVVKYXXXXXXXXXXXXXXXXXLFCGGLANMKKEQRFDKVISGIN--XXXXXXXXXXXXXXXXLQQSMAYSEAAVSTLQL--SRVSSIIMLIAYAAYLFFQLRTHRQLFE-EGQETKGEEDVEE
Q39253_______________SITAKGSSRELRLGR---TAHNMSSSSLRKKSDLRVIQKVPYKGLKDFLSNLQEVILGTKLAILFPAIPAAIICTYCGVSQPWIFGLSLLGLTPLAERVSFLTEQLAFYTGPTLGGLLNATCGNATELIIAILALTNNKVAVVKYSLLGSILSNLLLVLGTSLFCGGIANIRREQRFDRKQADVNFFLLLLGFLCHLLPLLVGYLKNGEASAAVLSDMQLSISRGFSIVMLISYIAYLVFQLWTHRQLFDAQEQEDEYDDDVEQ

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
595	66		33		0.997453
600			66	33	0.997452
627			33	66	0.997452
637	66		33		0.997452
647		66	33		0.997452
678		80		20	0.995493
690			80	20	0.995493
691			80	20	0.995493
707			75	25	0.996473
800	25		75		0.996473
827	25		75		0.996474
886	33	66			0.997455

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain