SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene99433

Length: 1634 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene99433

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana] ref\|NP_974240.1\| Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana] ref\|NP_974241.1\| Cyclophilin-like peptidyl-prolyl cis-tr	-	-	0.0	54%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%

Source	Gene names
Sma3	AT2G47320; At2g47320; At3g66654; At3g66654/T8E24_14; CYP21-3; CYP21-4; GSVIVT00033136001; Os07g0476500; OsI_25973; OsJ_24221; P0640E12.105; PHYPADRAFT_144936; POPTRDRAFT_832688; POPTRDRAFT_833662; RCOM_1346570; T8E24.14; T8I13.16;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	-
Sma3	peptide binding	GO:0042277	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G66654.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein chr3:2088694-2090297 FORWARD LENGTH=236	54%
RefSeq	Arabidopsis thaliana	NP_974240.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002311384.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNI6

Fln msg: your sequence is longer than subject: 233 - 163

Fln protein: MGRIKPQTLLQQSKKKKGPARISVSTIIVCNLIIIFLMFSLVAIYRQRAKRNRATSGSDGDEEMENFGRSKINSVPHQAIINTTKGLITLELFGKSSAHTVEKFVEWSERGYFNGLPFYRVIKHFVIQVGDPKFAGNREDWTVGGQLNVQLEFSPKHEAFMLGTSKLEDQGDGFELFITTAPIPDLNDKLNVFGRVIKGQDVVQEIEEVDTDEHFQPKSPIIINDVRLKDEL*

Protein Length: 234

Fln nts: ATGGGGCCAATTGATCTCTGCATTTTCAAAATACCACAGATTTCTCCCTACCTCAGGCGTGTGACCTTGGTTCTCTCCAAACTCTATTAACACGGTGAAACAACTACACAAAGCATGATCTGAATGGAACCATGATCTAATGGCTAGATTTCGTCGAGGGAAGTCGAGTCGGAGTCAAATTCGGGTATAATATGGAGGATGGGTGAGTCAGAATTGGGTAAAAATAGAAGGGAAGACAGAGGATCACCCCAAAACATATTTGTCTGATTGGTCGATTGATTTCTAAGAGGTCCAACGTTGTTTTCTGCTCCTCCACAACCAAATAGTTCATCTCCCCATCTCCTGGTTTTCAGATTCACTATACATTCAAAATTCGAAATTCGATATTCGGGACTGTGTAATCGAAGGTCGGTCTATCTTCAAGGTCCCCAGATCGATCTTCCTCCGAAGAAAGTGAGAGTAGAAACCTTTGAGACAAGCCAGGGGCA_-_ATGGGGAGAATTAAGCCACAGACATTATTGCAGCAGAGCAAAAAGAAAAAAGGACCCGCCCGTATCAGCGTTTCCACCATTATAGTGTGCAACTTGATCATCATCTTTCTTATGTTTTCTCTAGTGGCCATCTACAGGCAGAGGGCCAAGCGGAATCGGGCCACATCTGGGTCTGATGGTGATGAGGAAATGGAGAACTTTGGGAGGTCCAAAATAAACAGCGTTCCTCACCAAGCAATCATAAATACTACAAAGGGTTTAATCACATTGGAACTTTTTGGTAAAAGTTCTGCGCATACCGTTGAAAAGTTTGTGGAGTGGAGTGAACGTGGTTACTTCAATGGATTACCCTTCTATCGTGTCATTAAACACTTTGTAATTCAAGTTGGAGATCCAAAGTTTGCTGGAAACAGGGAAGATTGGACTGTTGGTGGTCAGCTCAATGTTCAACTTGAGTTCAGTCCAAAGCATGAAGCATTCATGCTGGGGACTTCCAAGTTGGAGGATCAGGGAGATGGATTTGAGCTTTTCATAACAACAGCACCCATTCCAGATTTAAACGATAAGCTTAATGTCTTTGGGCGTGTTATAAAAGGTCAAGATGTAGTTCAGGAAATAGAGGAGGTGGATACAGATGAACATTTTCAGCCGAAATCCCCCATCATCATTAATGATGTCCGTTTAAAGGATGAGCTCTGA___GACATACGTGCAGTCCTTTTTCAAGAAATTGTGATCGATAATCAGTTTTTCTTCCAAGTATTGCTTTTCTCCTGTTCTGTCTCGAGCATTTTATATACCCGGAGGAAACAGCGCTGTGGATACCAGGAAGATTGAAGTGATTTTAGCATCTCAGTTTGCCGCTGAACATTTGACAAGAGATTTAATGATTAAGATTTCTTTGACATTGGGAGAGATTTTTTCTAACTTGCGTTGAGACAAAATGACAATGAACTGCAATCCACTTTCGACAAAAAGGAAGAGATCAAGAATAAAGTTTGATGGGCTGACCCCATGTTAACTTATTAGTTATTATAGTGGAGGTTCCCATTTCCAAGTCAAACAGTTTGGATACCCACTTAATGATACCAGTATAACTATTAATTTTTGTAAAGCCACCAAGCTTGTATAAATGATGCCTTTCTTTTC

Fln Alignment:

AllPine_a_c21908___PHQAIINTTKGLITLELFGKSSAHTVEKFVEWSERGYFNGLPFYRVIKHFVIQVGDPKFAGNREDWTVGGQLNVQLEFSPKHE-AFMLGTSKLEDQGDGFELFITTAPIPDLNDKLNVFGRVIKGQDVVQEIEEVDTDEHFQPKSPIIINDVRLKD
A9NNI6_______________PPEVTLETSMGPVAVELYHKHAPKTCRNFLELSRRGYYNNVKFHRVIKDFMVQGGDPTGTGRGGESIYGPRFEDEITRDLKHTGAGILSMANAGPNTNGSQFFISLAPTPWLDEKHTIFGRVCKGMDVVKRLGNVQTDKNDRPIHDVKILRTTVKD

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
277		83	16		0.994512
309	14	85			0.993536
313			14	85	0.993533
314		85	14		0.993533
377	87		12		0.992556
394		85		14	0.993533
396			57	42	1.0
416			75	25	1.0
417	25		75		1.0
456	87		12		0.992554
471	85		14		0.993533
528		88		11	0.923564
627		10		90	0.90298
990		7		92	0.999602
1139		88		11	0.999952
1195		93		6	0.999364
1279		89		10	0.999919
1291		10		90	0.90298
1587	92		7		0.999664

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain