SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene98012

Length: 251 nt

UniGene Fasta

>sp_v3.0_unigene98012
CGTCGTGACCTTGGCTGCATCCTCTCCCCAGAGTCAAACTATCATGAACCCCACCATTTGCTTCTGAAAGAGCATGAAGGTGGTGCCCTGAGTCCACTGCCACCGAGGAAAGTTCGACATGATTCTCCTGATCAATCTCCTCCAAGAGATGCGTGGACCAAGTCTCCAGATTTGTCACCCCCAAGAAAATGTCAAAAGGATACTTTCTTAGAAGGGAAGGATCGAACTCTATCTCCTGTTCTGCACAATGA

Ace file of the UniGene sp_v3.0_unigene98012

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BUD13 protein n=1 Tax=Bos taurus RepID=A5D7I3_BOVIN	-	-	5.0e-07	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Bud13	IPR018609	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPZ8

Fln msg: Distance to subject end: 342 aas, your sequence is shorter than subject: 83 - 785

Fln protein: RRDLGCILSPESNYHEPHHLLLKEHEGGALSPLPPRKVRHDSPDQSPPRDAWTKSPDLSPPRKCQKDTFLEGKDRTLSPVLHN

Protein Length: 84

Fln nts: CGTCGTGACCTTGGCTGCATCCTCTCCCCAGAGTCAAACTATCATGAACCCCACCATTTGCTTCTGAAAGAGCATGAAGGTGGTGCCCTGAGTCCACTGCCACCGAGGAAAGTTCGACATGATTCTCCTGATCAATCTCCTCCAAGAGATGCGTGGACCAAGTCTCCAGATTTGTCACCCCCAAGAAAATGTCAAAAGGATACTTTCTTAGAAGGGAAGGATCGAACTCTATCTCCTGTTCTGCACAATGA

Fln Alignment:

AllPine_a_c18927___LSPESNYXXXXXXXXXXXXGGALSPLPPRKVRHDSPDQSPPRDAWTKSPDLSPPRKCQKDTFLEGKDRTLSPVLHN
B8LPZ8_______________LSPDSNYHEPHHSLLQEHEGGAPNPLPPRKVRHDSPDLSPPRNAWTKSADLSPPRKCQKDTFLEVKDREESPALHN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain