SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene97859

Length: 312 nt

UniGene Fasta

>sp_v3.0_unigene97859
CGTCGTGACCTTGGCTGTCACTCATTTAACGGACAATACAACAAAAGTGGAAATGGATCCCGGCAGCTCCCTCGCCTTCGATAGCCATTATTTCGGTAACCTGGAGCTAAATAGAGGCCTGTTCCAATCGGATGCCGCTCTTCTCAGCAATTTCGTTTCCAAGGCCAACGTTGATAATCTGCGGAATCAAACAGAGTTTTTCGAAAACTTCAAACTTTCGATGCAACGGATGGGAGAAATTGAAATGCTCACTGGGAGTGCAGGAGAGATTAGGAGAAAATGTGCCTTTGTGAACTGACAAGATGATCTAAA

Ace file of the UniGene sp_v3.0_unigene97859

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative peroxidase n=3 Tax=Cinnamomum micranthum f. kanehirae RepID=A2I994_9MAGN	-	-	2.0e-23	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Peroxidase 39	-	-	6.887e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	8.405e-22	-

Source	KEGGs	Term	e value	Identity
Sma3	Phenylalanine metabolism	00360	8.405e-22	%
Sma3	Methane metabolism	00680	8.405e-22	%
Sma3	Phenylpropanoid biosynthesis	00940	8.405e-22	%
Sma3	Biosynthesis of phenylpropanoids	01061	8.405e-22	%
Sma3	Metabolic pathways	01100	8.405e-22	%
Sma3	Biosynthesis of secondary metabolites	01110	8.405e-22	%

Source	Gene names
Sma3	At3g01190; At4g11290; At5g15180; F8L21.80; F8M21_70; GSVIVT00019842001; GSVIVT00019843001; GSVIVT00023610001; LOC_Os05g41990; OJ1057_B02.6; Os01g0378100; Os05g0499300; OsI_02005; OsI_20490; OsJ_01847; P0416G11.30; P27; P39; P56; PER27; PER39; PER56; PODa;

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G11290.1	Peroxidase superfamily protein chr4:6869993-6871476 FORWARD LENGTH=326	2.0e-22	53%
RefSeq	Arabidopsis thaliana	NP_192868.1	peroxidase 39 [Arabidopsis thaliana]	2.0e-22	53%
RefSeq	Populus trichocarpa	XP_002317707.1	predicted protein [Populus trichocarpa]	1.0e-24	54%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1P4

Fln msg: your sequence is shorter than subject: 99 - 324

Fln protein: VVTLAVTHLTDNTTKVEMDPGSSLAFDSHYFGNLELNRGLFQSDAALLSNFVSKANVDNLRNQTEFFENFKLSMQRMGEIEMLTGSAGEIRRKCAFVN*

Protein Length: 100

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTAACGGACAATACAACAAAAGTGGAAATGGATCCCGGCAGCTCCCTCGCCTTCGATAGCCATTATTTCGGTAACCTGGAGCTAAATAGAGGCCTGTTCCAATCGGATGCCGCTCTTCTCAGCAATTTCGTTTCCAAGGCCAACGTTGATAATCTGCGGAATCAAACAGAGTTTTTCGAAAACTTCAAACTTTCGATGCAACGGATGGGAGAAATTGAAATGCTCACTGGGAGTGCAGGAGAGATTAGGAGAAAATGTGCCTTTGTGAACTGA___CAAGATGATCTAAA

Fln Alignment:

AllPine_a_c18690___DNTTKVEMDPGSSLAFDSHYFGNLELNRGLFQSDAALLSNFVSKANVDNLRNQTEFFENFKLSMQRMGEIEMLTGSAGEIRRKCAFVN
A9P1P4_______________DNKTIVEMDPGSFRTFDTHYYVNVKKNRGLFQSDAALLTNNEAQSYINKGLESSSFLWDFARSMEKMGRIGVLTGTAGQIRRHCAFTN

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
68	25			75	0.996474
69		75	25		0.996473
139			50	50	1.0
147		33	66		0.997452
247	33		66		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain