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UniGene Name: sp_v3.0_unigene97781
Length: 220 nt
This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense
 UniGene Fasta (sense)
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| >sp_v3.0_unigene97781
G |
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Ace file of the UniGene sp_v3.0_unigene97781 (antisense)
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If you push the Download ace button, you will download an ace file of this UniGene.
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| Annotations |
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| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | Cytosine-specific methyltransferase n=6 Tax=Nicotiana RepID=A0A9R7_TOBAC | - | - | 5.0e-26 | 77% |
| FL-Next | Isoform 3 of DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa subsp. japonica GN=MET1B | - | - | 0.0 | 76% |
| Sma3 | Cytosine-specific methyltransferase | - | - | 0.0 | - |
| Source | ECs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | DNA (cytosine-5-)-methyltransferase. | EC:2.1.1.37 | - | 0.0 | - |
| Source | KEGGs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Cysteine and methionine metabolism | 00270 | 0.0 | % | |
| Sma3 | Metabolic pathways | 01100 | 0.0 | % |
| Source | Gene names |
|---|---|
| Sma3 | AT4g13610; AT4g14140; ATHIM; At4g08990; At4g13610; At5g49160; BrMET1a; BrMET1b; CHLREDRAFT_112308; CHLREDRAFT_8793; DMT1; DMT901; DMT902; GSVIVT00003628001; GSVIVT00003629001; GSVIVT00035341001; K21P3.3; LesMET; MET1; MET1-2; METII; NtMET1; OJ1506_G02.17; |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
| Sma3 | DNA binding | GO:0003677 | Molecular Function | 0.0 | - |
| Sma3 | DNA (cytosine-5-)-methyltransferase activity | GO:0003886 | Molecular Function | 0.0 | - |
| Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
| Sma3 | methyltransferase activity | GO:0008168 | Molecular Function | 0.0 | - |
| Sma3 | electron carrier activity | GO:0009055 | Molecular Function | 0.0 | - |
| Sma3 | DNA methylation | GO:0006306 | Biological Process | 0.0 | - |
| Sma3 | regulation of gene expression by genetic imprinting | GO:0006349 | Biological Process | 0.0 | - |
| Sma3 | DNA mediated transformation | GO:0009294 | Biological Process | 0.0 | - |
| Sma3 | embryo development ending in seed dormancy | GO:0009793 | Biological Process | 0.0 | - |
| Sma3 | negative regulation of flower development | GO:0009910 | Biological Process | 0.0 | - |
| Sma3 | zygote asymmetric cytokinesis in embryo sac | GO:0010069 | Biological Process | 0.0 | - |
| Sma3 | maintenance of DNA methylation | GO:0010216 | Biological Process | 0.0 | - |
| Sma3 | DNA methylation on cytosine within a CG sequence | GO:0010424 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Bromo adjacent homology (BAH) domain | IPR001025 | - | 0.0 | - |
| Sma3 | C-5 cytosine methyltransferase | IPR001525 | - | 0.0 | - |
| Sma3 | 2Fe-2S ferredoxin, iron-sulphur binding site | IPR006058 | - | 0.0 | - |
| Sma3 | DNA (cytosine-5)-methyltransferase 1, eukaryote | IPR017198 | - | 0.0 | - |
| Sma3 | DNA methylase, C-5 cytosine-specific, active site | IPR018117 | - | 0.0 | - |
| Sma3 | EF-Hand 1, calcium-binding site | IPR018247 | - | 0.0 | - |
| Source | Species | ID | Description | e value | Identity |
|---|---|---|---|---|---|
| ATG | Arabidoptis thaliana | AT4G08990.1 | DNA (cytosine-5-)-methyltransferase family protein chr4:5764781-5770496 FORWARD LENGTH=1512 | 4.0e-31 | 79% |
| RefSeq | Arabidopsis thaliana | NP_193150.1 | DNA methyltransferase 2 [Arabidopsis thaliana] | 4.0e-31 | 76% |
| RefSeq | Populus trichocarpa | XP_002305346.1 | DNA methyltransferase [Populus trichocarpa] | 2.0e-29 | 72% |
| Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: sp_plants
Fln subject: B1Q3J6-3
Fln msg: Distance to subject end: 367 aas, your sequence is shorter than subject: 72 - 1486
Fln protein:
Q
Protein Length:
73
Fln nts:
G
Fln Alignment:
AllPine_a_c18541___QNSLATLDIFAGCGGLSHGLGQSGVSFTKWAIEYEEPAAEAFKLNHPEAEVFCDNCNVILRSIMEKVGERED
B1Q3J6-3_____________ENRLATLDIFAGCGGLSEGLQQAGVSFTKWAIEYEEPAGEAFTKNHPEAAVFVDNCNVILKAIMDKCGDADD
| SNPs (tot: 8) |
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| Position | A % | C % | G % | T % | Probability |
|---|---|---|---|---|---|
| 72 | 75 | 25 | 0.996473 | ||
| 102 | 66 | 33 | 0.997452 | ||
| 104 | 66 | 33 | 0.997452 | ||
| 107 | 66 | 33 | 0.997452 | ||
| 110 | 33 | 66 | 0.997452 | ||
| 128 | 66 | 33 | 0.997452 | ||
| 147 | 33 | 66 | 0.997452 | ||
| 149 | 33 | 66 | 0.997452 |
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
