SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene97724

Length: 243 nt

UniGene Fasta

>sp_v3.0_unigene97724
GGATCCAAGGAGCCAAGATTGTATGTGAGAGTTGACAAGCAGGTGGTATTGCAGGTGAAGCATCTGATGTGGAAGTTCAGGGGAAATCAGACAATTGAGGTGGATGGAACCTCGATACAAGTCTTCTGGGATGTGCACAATTGGCTCTTCAATCCCAGCAACGGCCATGCTGTCTTCATGTTCCAGACTTGTGATGATCAGATTTCAGACAATTCTAGGAGATCCAATGATGTTGCTGCTCGT

Ace file of the UniGene sp_v3.0_unigene97724

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF868 domain containing protein	-	-	2.0e-29	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%

Source	Gene names
Sma3	At5g28150; GSVIVT00019979001; GSVIVT00021666001; GSVIVT00022079001; GSVIVT00023730001; GSVIVT00031134001; GSVIVT00032713001; LOC_Os03g59200; OJ1121_A05.24; OSJNBa0059E14.19; Os03g0806700; Os07g0572300; OsI_13984; OsI_26558; OsJ_13031; OsJ_24817; PHYPADRAF

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L24e-related	IPR000988	-	-
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Protein of unknown function DUF868, plant	IPR008586	-	-
Sma3	TRASH	IPR011017	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G04220.1	Plant protein of unknown function (DUF868) chr2:1445401-1446324 FORWARD LENGTH=307	2.0e-20	50%
RefSeq	Arabidopsis thaliana	NP_178505.1	uncharacterized protein [Arabidopsis thaliana]	2.0e-20	50%
RefSeq	Populus trichocarpa	XP_002307590.1	predicted protein [Populus trichocarpa]	8.0e-25	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNS3

Fln msg: Distance to subject end: 26 aas, your sequence is shorter than subject: 81 - 270

Fln protein: GSKEPRLYVRVDKQVVLQVKHLMWKFRGNQTIEVDGTSIQVFWDVHNWLFNPSNGHAVFMFQTCDDQISDNSRRSNDVAAR

Protein Length: 82

Fln nts: GGATCCAAGGAGCCAAGATTGTATGTGAGAGTTGACAAGCAGGTGGTATTGCAGGTGAAGCATCTGATGTGGAAGTTCAGGGGAAATCAGACAATTGAGGTGGATGGAACCTCGATACAAGTCTTCTGGGATGTGCACAATTGGCTCTTCAATCCCAGCAACGGCCATGCTGTCTTCATGTTCCAGACTTGTGATGATCAGATTTCAGACAATTCTAGGAGATCCAATGATGTTGCTGCTCGT

Fln Alignment:

AllPine_a_c18433___GSKEPRLYVRVDKQVVLQVKHLMWKFRGNQTIEVDGTSIQVFWDVHNWLFNPSNGHAVFMFQT
B8LNS3_______________GPREPKLCVRIDKQLVVQVKHLIWKFRGNQTISVDGLPIEMFWDVHDWLFNPSLGHAVFMFKT

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
101	33		66		0.997471
105	66		33		0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain