SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene97697

Length: 144 nt

UniGene Fasta

>sp_v3.0_unigene97697
GAACCGCATAACGCTTAGAACACTTGTCGCACTGGAAGGCCCATTCCAAGACCTGCGGCACCAGAGAATATCGCTGCGATTGCGGTACTCTCTTTTCCAGGAGAGATAGTTTATAACACACAGGGCCTTCTGTGATGCTTTGGC

Ace file of the UniGene sp_v3.0_unigene97697

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Nucleic acid binding protein, putative	-	-	2.244e-25	-

Source	Gene names
Sma3	12.EGGPLANT.6; 12.PETUNIA.6; 12.POTATO.11; At1g03840; At1g14580; At1g55110; At2g02070; At2g02080; At2g02080/F5O4.15; At3g13810; At3g45260; At3g50700; At5g03150; At5g44160; At5g66730; B1066G12.13; Ehd2; F15A17.180; F18N11.20; GSVIVT00014644001; GSVIVT00018

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	regulation of meristem growth	GO:0010075	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	regulation of cell division	GO:0051302	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G03840.1	MGP C2H2 and C2HC zinc fingers superfamily protein chr1:967596-970058 REVERSE LENGTH=506	7.0e-14	92%
RefSeq	Arabidopsis thaliana	NP_171880.1	zinc finger protein MAGPIE [Arabidopsis thaliana]	9.0e-14	92%
RefSeq	Populus trichocarpa	XP_002314745.1	predicted protein [Populus trichocarpa]	5.0e-14	96%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LP08

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 110 and 110, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 447 aas, your sequence is shorter than subject: 47 - 698

Fln protein: TA*RLEHLSHWKAHSKTCGTREYRCDCGTLFSRRDxxITHRAFCDAL

Protein Length: 48

Fln nts: GAACCGCATAACGCTTAGAACACTTGTCGCACTGGAAGGCCCATTCCAAGACCTGCGGCACCAGAGAATATCGCTGCGATTGCGGTACTCTCTTTTCCAGGAGAGATxxxxxxATAACACACAGGGCCTTCTGTGATGCTTTGGC

Fln Alignment:

AllPine_a_c18373___SHWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDAL
B8LP08_______________SDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain