SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene97639

Length: 204 nt

UniGene Fasta

>sp_v3.0_unigene97639
GCGTAGAGCTAGCCTTTTGTCTGAGATGTGTCACACGAGTCTCACAAGTAGTTTTTTTCTGGTTAATTGACTCTTTTACTAAATGCCTTCCATCCAGATTTGAAAACAATGTCAAAGCGCCTGGACAGTGAGCAATACTATGTAACACTGGACATGTTCATTGCGGATGTAAAGAGGATGTTTACGAATGCACGCAAATATAAT

Ace file of the UniGene sp_v3.0_unigene97639

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone acetyltransferase gcn5, putative n=1 Tax=Ricinus communis RepID=B9S4R6_RICCO	-	-	5.0e-10	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Histone acetyltransferase	-	-	6.086e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Histone acetyltransferase.	EC:2.3.1.48	-	2.857e-06	-

Source	Gene names
Sma3	GCN5; GSVIVT00023828001; GSVIVT00023830001; HAC104; HAG1501; HAG903; LOC_Os10g28040; Os10g0415900; OsJ_31522; PHYPADRAFT_130814; POPTRDRAFT_559629; RCOM_0991560; gcn5;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	histone acetyltransferase activity	GO:0004402	Molecular Function	-
Sma3	N-acetyltransferase activity	GO:0008080	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	chromatin modification	GO:0016568	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GNAT domain	IPR000182	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G54610.1	HAT1, GCN5, HAG1, HAC3, HAG01, BGT histone acetyltransferase of the GNAT family 1 chr3:20213593-20217375 FORWARD LENGTH=568	1.0e-11	69%
RefSeq	Arabidopsis thaliana	NP_567002.1	histone acetyltransferase GCN5 [Arabidopsis thaliana]	2.0e-11	69%
RefSeq	Populus trichocarpa	XP_002306812.1	histone acetyltransferase [Populus trichocarpa]	4.0e-13	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPU6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 33 aas, your sequence is shorter than subject: 68 - 630

Fln protein: A*S*PFV*DVSHESHK*FFSG*LTLLLNAFHPDLKTMSKRLDSEQYYVTLDMFIADVKRMFTNARKYN

Protein Length: 69

Fln nts: GCGTAGAGCTAGCCTTTTGTCTGAGATGTGTCACACGAGTCTCACAAGTAGTTTTTTTCTGGTTAATTGACTCTTTTACTAAATGCCTTCCATCCAGATTTGAAAACAATGTCAAAGCGCCTGGACAGTGAGCAATACTATGTAACACTGGACATGTTCATTGCGGATGTAAAGAGGATGTTTACGAATGCACGCAAATATAAT

Fln Alignment:

AllPine_a_c18237___DLKTMSKRLDSEQYYVTLDMFIADVKRMFTNARKYN
B8LPU6_______________DLKTMSKRLDSEQYYVTLDMFVADVKRMFTNARTYN

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain