SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene97284

Length: 351 nt

UniGene Fasta

>sp_v3.0_unigene97284
AATCTCTTCAATGTATATCTCCTGGGATTAGTGTTGCTGACACTTTCAGTCTCCGTCTCGGCCCTCAAGCCTCCTGGTTGTCCGAAAACTGACACAGTGTGCATGAGTAAGAATAAGCCAACTTCCACGCAGCACACCTTTTTCTTCGTGGCTCTATATTTGATATCCATCGGCACAGGCGGCCACAAGCCCTCTCTACAATCCTTCGGCGCAGACCAGTTTGATGAGGACGATAAAGCTGAAAAGCTTAAAAAGGCATCTTTCTTTAATTGGTGGTATTGCGGCCTGTGTGGCGGCGTTCTGTTGGCGGTGACGGTGGTTGTGTACATTCAAGAGCATGTGAACTGGGGA

Ace file of the UniGene sp_v3.0_unigene97284

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transporter-like protein [Arabidopsis thaliana]	-	-	5.0e-21	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Sma3	Oligopeptide transporter, putative	-	-	4.905e-11	-

Source	Gene names
Sma3	At1g72115; At2g02020; At2g02040; At2g37900; At2g40460; At3g54140; At5g46040; B1026C12.10; F14H20.11; F24B22.100; F5K20_260; GSVIVT00001825001; GSVIVT00014519001; GSVIVT00020319001; GSVIVT00021406001; GSVIVT00021470001; GSVIVT00021471001; GSVIVT00028535001

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	high affinity oligopeptide transporter activity	GO:0015334	Molecular Function	-
Sma3	dipeptide transporter activity	GO:0042936	Molecular Function	-
Sma3	tripeptide transporter activity	GO:0042937	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	dipeptide transport	GO:0042938	Biological Process	-
Sma3	tripeptide transport	GO:0042939	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	POX	IPR006563	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G53960.1	Major facilitator superfamily protein chr3:19978306-19980886 REVERSE LENGTH=602	4.0e-26	58%
RefSeq	Arabidopsis thaliana	NP_190964.2	major facilitator protein [Arabidopsis thaliana]	5.0e-26	58%
RefSeq	Populus trichocarpa	XP_002309091.1	predicted protein [Populus trichocarpa]	3.0e-27	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWU3

Fln msg: Distance to subject end: 367 aas, your sequence is shorter than subject: 117 - 604

Fln protein: NLFNVYLLGLVLLTLSVSVSALKPPGCPKTDTVCMSKNKPTSTQHTFFFVALYLISIGTGGHKPSLQSFGADQFDEDDKAEKLKKASFFNWWYCGLCGGVLLAVTVVVYIQEHVNWG

Protein Length: 118

Fln nts: AATCTCTTCAATGTATATCTCCTGGGATTAGTGTTGCTGACACTTTCAGTCTCCGTCTCGGCCCTCAAGCCTCCTGGTTGTCCGAAAACTGACACAGTGTGCATGAGTAAGAATAAGCCAACTTCCACGCAGCACACCTTTTTCTTCGTGGCTCTATATTTGATATCCATCGGCACAGGCGGCCACAAGCCCTCTCTACAATCCTTCGGCGCAGACCAGTTTGATGAGGACGATAAAGCTGAAAAGCTTAAAAAGGCATCTTTCTTTAATTGGTGGTATTGCGGCCTGTGTGGCGGCGTTCTGTTGGCGGTGACGGTGGTTGTGTACATTCAAGAGCATGTGAACTGGGGA

Fln Alignment:

AllPine_a_c17328___KPPGCPKTDTVCMSKNKPTSTQHTFFFVALYLISIGTGGHKPSLQSFGADQFXXXXXXXXXXXXSFFNWWYCGLCGGVLLAVTVVVYIQEHVNWG
A9NWU3_______________RPPPCDITSYTCL---KASGSQVGFFFFSLYLVALGQGGHKPCLQAFGADQFDERDPEERKYRSSFFNWWYFGMCSGLVVSISVLMYIQENVGWG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
91		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain