SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene97129

Length: 710 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene97129 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein kinase Xa21, receptor type precursor [Oryza sativa Japonica Group] gb\|EEE66513.1\| hypothetical protein OsJ_22984 [Oryza sativa Japonica Group]	-	-	9.0e-36	40%
FL-Next	tr=Somatic embryogenesis receptor-like kinase 1; Pinus massoniana.	-	-	0.0	30%
Sma3	Serine-threonine protein kinase, plant-type, putative	-	-	8.022e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	1.261e-09	-

Source	Gene names
Sma3	GSVIVT00018756001; GSVIVT00018759001; GSVIVT00018767001; GSVIVT00025178001; GSVIVT00025215001; GSVIVT00025217001; GSVIVT00028428001; GSVIVT00029260001; GSVIVT00029733001; GSVIVT00029735001; GSVIVT00029738001; GSVIVT00031303001; GSVIVT00031304001; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
271		75		25	0.996473
277	25		75		0.996473
306	33		16	50	1.0
338	20	20	20	40	0.994159
349		16		83	0.994512
365		40		60	1.0
370			33	66	0.997452
374	33		66		0.997452
387		66		33	0.997452
389	66			33	0.997452
390		33		66	0.997452
404		66	33		0.997452
406	33	66			0.997452
447	75			25	0.996476
448		75	25		0.996473
450	75		25		0.996476
451	75			25	0.996473
452		75	25		0.996473
457			25	75	0.996473
458	75	25			0.996473
463	75		25		0.996473
464	75		25		0.996473
469			25	75	0.996473
470	25	25	50		0.995533
471		66		33	0.997452
472	25	25	25	25	0.997387
474		66		33	0.997452
513	66			33	0.997476
514	33		66		0.997454
515		66		33	0.997452
519			66	33	0.997452
565	66		33		0.997476
568	66		33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain