SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene96847

Length: 507 nt

UniGene Fasta

>sp_v3.0_unigene96847
CGTCGTGACCTTGGCTGTCACTCAATTCTTACATCTACTGCGTTGGATCCCCTTACTCCATCCTTGTCTCCCCATACTCATGGCTGCTGCAAATCTAATATGATGCTGAGACCAGGGAGTCATAATTGTTCTTGTGTATATCCCATTAGATTGCAACTTCGGATTCTAAATGTTTCAACCAGTACTACAAATTGGAGTGCTGAGTTCCAGCAGGAACTTGCTTCCCAGCTTGGTCTAATGGGAGCTCAGTTTGACATCACCTCTTTCTATATTGAAAGTGCAAGTGAGCTCAACATGTCTATGGATATTGCTCCCTCGACTGGCATGAGCTTTTCTTACCAGGAGGCAGGCAGAATCAACTATACTTTGGTCACTCATAAAGTACACCTCAATAGTTCTTTATTTGGTGGTTACCAGCTTCTGAATTTCACTTGGGTGGAACCACCTGCATTGCCTCCTGCAATTCCAGTTCCAGCTCCAGTTATCTCTCCTGAAGGGCCTTCATCT

Ace file of the UniGene sp_v3.0_unigene96847

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] gb\|AAM78107.1\| AT4g02010/T10M13_2 [Arabidopsis thaliana] gb\|AAP88328.1\| At4g02010/T10M13_2 [Arabidopsis thaliana] gb\|AEE82111.1\| protein kinase family protein [Arabidopsis thaliana]	-	-	1.0e-27	48%
FL-Next	tr=Kinase, putative; Ricinus communis (Castor bean).	-	-	0.0	53%

Source	Gene names
Sma3	AT4g02010; At4g02010; GSVIVT00028126001; Os01g0253100; OsI_01206; OsJ_01126; P0503G09.11; POPTRDRAFT_644857; POPTRDRAFT_824128; RCOM_1346820; T10M13.2; VITISV_041991;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G02010.1	Protein kinase superfamily protein chr4:881457-885222 FORWARD LENGTH=725	4.0e-33	48%
RefSeq	Arabidopsis thaliana	NP_192110.2	protein kinase family protein [Arabidopsis thaliana]	6.0e-33	48%
RefSeq	Populus trichocarpa	XP_002320287.1	predicted protein, partial [Populus trichocarpa]	3.0e-39	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RND0

Fln msg: Distance to subject end: 414 aas, your sequence is shorter than subject: 169 - 711

Fln protein: RRDLGCHSILTSTALDPLTPSLSPHTHGCCKSNMMLRPGSHNCSCVYPIRLQLRILNVSTSTTNWSAEFQQELASQLGLMGAQFDITSFYIESASELNMSMDIAPSTGMSFSYQEAGRINYTLVTHKVHLNSSLFGGYQLLNFTWVEPPALPPAIPVPAPVISPEGPSS

Protein Length: 170

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTTACATCTACTGCGTTGGATCCCCTTACTCCATCCTTGTCTCCCCATACTCATGGCTGCTGCAAATCTAATATGATGCTGAGACCAGGGAGTCATAATTGTTCTTGTGTATATCCCATTAGATTGCAACTTCGGATTCTAAATGTTTCAACCAGTACTACAAATTGGAGTGCTGAGTTCCAGCAGGAACTTGCTTCCCAGCTTGGTCTAATGGGAGCTCAGTTTGACATCACCTCTTTCTATATTGAAAGTGCAAGTGAGCTCAACATGTCTATGGATATTGCTCCCTCGACTGGCATGAGCTTTTCTTACCAGGAGGCAGGCAGAATCAACTATACTTTGGTCACTCATAAAGTACACCTCAATAGTTCTTTATTTGGTGGTTACCAGCTTCTGAATTTCACTTGGGTGGAACCACCTGCATTGCCTCCTGCAATTCCAGTTCCAGCTCCAGTTATCTCTCCTGAAGGGCCTTCATCT

Fln Alignment:

AllPine_a_c16270___PSLSPHTHGCCKSNMMLRPGSHNCSCVYPIRLQLRILNVSTSTTNWSAEFQQELASQLGLMGAQFDITSFYIESASELNMSMDIAPSTGMSFSYQEAGRINYTLVTHKVHLNSSLFGGYQLLNFTW
B9RND0_______________PPLSPQISDCCKPDMVLKRGSNDCHCVYPIKLDLLLVNVSQNPS-WN-KFLQDLASQLGLRVSQIELINFYVLSLSRLNISMDITPHTGISFSGSDASFINSSLALHKVHFDSSLVGDYRLLNLTW

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
139		20		80	0.995495
419		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain