SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene96342

Length: 428 nt

UniGene Fasta

>sp_v3.0_unigene96342
AATGTCATGTCAGCCAAAGAGTTGACAGGGGATGAAATTGAGACGCTTTTCTCATCAGTTGGGGAAGAGGTGAAGGTGATTTGTTCTGTAGCAGATGATTTACGATCTAGGATAAATGGAGAAAAGGTAACATATGTTGTGAATCGAAATATCAACTATACAAATATATGCAGTTATAGTTGTGCATTTTGCGCTTTCAGTAAGGGCCAATCCAGTGATAACTTGCGTGGAAAGCCATACCAGATGTCACTAGAGGAAATATCTCAAAGAACAATTGAAGCCTGGGATAGGGGAGCAACTGAGATTTGTATGCAGGGAGGTATCCATCCAGCATACTCTGGGAAGACATATCTGGATATTCTGCATGCTGTGAAGAGCGTTGTTCCTCAAATTCATGTTCATGCATTTTCACCCTTGGAGGTTTTTCA

Ace file of the UniGene sp_v3.0_unigene96342

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FO synthase [Rhodopseudomonas palustris HaA2] gb\|ABD09109.1\| FO synthase subunit 2 / FO synthase subunit 1 [Rhodopseudomonas palustris HaA2]	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	69%

Source	Gene names
Sma3	CHLREDRAFT_107387; MICPUCDRAFT_60554; MICPUN_83126; OSTLU_51122; Ot12g01440; PHYPADRAFT_234559; RCOM_1866740;

Source	GOs	Term	Type	Identity
Sma3	transferase activity, transferring alkyl or aryl (other than methyl) groups	GO:0016765	Molecular Function	-
Sma3	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	-
Sma3	cofactor biosynthetic process	GO:0051188	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	FO synthase, subunit 2-like	IPR005244	-	-
Sma3	Elongator protein 3/MiaB/NifB	IPR006638	-	-
Sma3	Radical SAM	IPR007197	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8RY80

Fln msg: Distance to subject end: 181 aas, your sequence is shorter than subject: 142 - 760

Fln protein: NVMSAKELTGDEIETLFSSVGEEVKVICSVADDLRSRINGEKVTYVVNRNINYTNICSYSCAFCAFSKGQSSDNLRGKPYQMSLEEISQRTIEAWDRGATEICMQGGIHPAYSGKTYLDILHAVKSVVPQIHVHAFSPLEVF

Protein Length: 143

Fln nts: AATGTCATGTCAGCCAAAGAGTTGACAGGGGATGAAATTGAGACGCTTTTCTCATCAGTTGGGGAAGAGGTGAAGGTGATTTGTTCTGTAGCAGATGATTTACGATCTAGGATAAATGGAGAAAAGGTAACATATGTTGTGAATCGAAATATCAACTATACAAATATATGCAGTTATAGTTGTGCATTTTGCGCTTTCAGTAAGGGCCAATCCAGTGATAACTTGCGTGGAAAGCCATACCAGATGTCACTAGAGGAAATATCTCAAAGAACAATTGAAGCCTGGGATAGGGGAGCAACTGAGATTTGTATGCAGGGAGGTATCCATCCAGCATACTCTGGGAAGACATATCTGGATATTCTGCATGCTGTGAAGAGCGTTGTTCCTCAAATTCATGTTCATGCATTTTCACCCTTGGAGGTTTTTCA

Fln Alignment:

AllPine_a_c15098___MSAKELTGDEIETLFSSVGEEVKVICSVADDLRSRINGEKVTYVVNRNINYTNICSYSCAFCAFSKGQSSDNLRGKPYQMSLEEISQRTIEAWDRGATEICMQGGIHPAYSGKTYLDILHAVKSVVPQIHVHAFSPLEVF
D8RY80_______________VAGEDLTRDEITMLFYSMGPDFDYICSSANRLRESVNGNKVTYVVNRNINYTNVCSYKCQFCAFSKGKQNENLRGKPYSLSLEEISRRTIEARERGATEVCMQGGIHPDYTGETYLEILKAVKSAVPGIHVHAFSPLEVY

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
218		33		66	0.997452
249		33		66	0.997453
250	20	60		20	0.992555
253		80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain