SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene95957

Length: 1413 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene95957

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	-	-	1.0e-15	22%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G64460.2	Phosphoglycerate mutase family protein chr5:25773009-25775104 REVERSE LENGTH=282	60%
RefSeq	Arabidopsis thaliana	NP_001185263.1	phosphoglycerate mutase-like protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002313210.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ95

Fln msg: your sequence is longer than subject: 336 - 284

Fln protein: MLSQLFYSRPISSPCFGSLKVEGPARSTSLRNSRTTSFICRNSIIQVMAGTLDTGLYPLHHCKTLHLVRHGQGYHNVAGEKDHDAYMSYEFFDTSLTPLGWRQVDNLRKHIWKTGIASRIELVVTSPLMRTMQTAVGVFGGGGYIDGDASPLLMVTDAGKGDRAAITSANCPPFIANEWCREQMGLHPCDKRKNIDEYRPLFPGIDFSLIETNEDLLWKPDARERRIEVAARGRAFMNWLLTRKEKEIAVVSHSSFLIHTLGLFGNDCHSLLRKEIHKAYANCELRSFVIADRSAIGTNLPLTDFSGGIPRGPDVPSDYEDVKSLDTQDKSSTTS*

Protein Length: 337

Fln nts: TCGAGCTTCTTCTGCGCCAATA_-_ATGTTGTCTCAATTGTTTTACTCCCGTCCTATTTCGTCTCCTTGTTTTGGCAGTCTGAAGGTTGAAGGTCCTGCGAGGTCGACTTCACTCAGGAATTCCAGAACGACGTCTTTTATCTGTCGCAACTCCATTATTCAAGTTATGGCTGGAACACTGGATACAGGTTTATATCCATTGCACCATTGTAAAACTCTGCACCTGGTGAGGCATGGGCAGGGATACCACAATGTGGCAGGAGAGAAGGACCATGATGCATACATGTCATACGAATTTTTTGATACAAGCCTTACTCCTTTAGGATGGCGGCAGGTTGACAATCTTCGAAAGCATATTTGGAAAACTGGAATTGCTTCTAGGATTGAGTTGGTTGTGACTTCTCCATTAATGAGGACTATGCAGACAGCAGTGGGTGTTTTTGGTGGTGGAGGCTATATAGACGGTGATGCATCTCCTCTGCTTATGGTGACTGATGCTGGCAAAGGCGATCGTGCTGCAATCACAAGTGCAAATTGTCCACCCTTTATAGCAAATGAATGGTGTCGAGAACAAATGGGATTACATCCATGTGACAAGAGGAAAAACATTGATGAGTATCGACCCCTTTTTCCTGGCATTGATTTTTCTCTGATAGAAACAAATGAAGATCTTTTGTGGAAGCCAGATGCCAGAGAAAGAAGAATAGAAGTTGCAGCGCGTGGAAGAGCTTTTATGAACTGGTTGTTGACACGGAAGGAAAAAGAAATAGCAGTTGTTTCACACAGTAGCTTCTTAATACACACTTTGGGCCTCTTTGGGAACGACTGCCATTCCTTGCTTAGAAAAGAGATTCACAAAGCATATGCCAACTGTGAACTACGCTCTTTTGTCATTGCAGATAGAAGTGCAATTGGAACCAATTTACCTCTGACAGATTTTTCCGGAGGCATTCCTCGTGGTCCTGATGTACCCAGTGATTATGAAGATGTCAAAAGTTTAGACACTCAAGACAAATCATCAACTACATCATAA___TCCAGATGAAGACAGGATTTGTCTTGGATATAATCTTCGTTAACAGAACTCCCATGATTTCAGGGATACTGCTTATTTGTTAGGATCTCCATTTGATAAGATTATATTTTCACTTTGTTATCATATGACTCCTCTAGAATGCACTTCCTACAATATATTGAGAGATATTTTCCACAAAACTTGTGAAAACGGTAATTATGAAGATGTCAAATGTTTAGAGACTTGAGACAAATCATCAACTTCATCATAATCCAGATGAAAACAGGTTTTGTATTGGATAGGATCCTTGTTAATATTACTCACATGATTTCAAAGATACTGCTTAGTTGTTAGGATCTCCATTCAGTGAAATTATATTTCACTTTGTTATCATATGACTCATT

Fln Alignment:

AllPine_a_c14137___IIQVMAGTLDTGLYPLHHCKTLHLVRHGQGYHNVAGEKDHDAYMSYEFFDTSLTPLGWRQVDNLRKHIWKTGIASRIELVVTSPLMRTMQTAXXXXXXXXYIDGDASPLLMVTDAGKGDRAAITSANCPPFIANEWCREQMGLHPCDKRKNIDEYRPLFPGIDFSLIETNEDLLWKPDARERRIEVAARGRAFMNWLLTRKEKEIAVVSHSSFLIHTLGLFGNDCHSLLRKEIHKAYANCELRSFVIADRSAIGTNLPLTDFSGGIPRGPDVPSDYEDV
A9NZ95_______________MLEDMAGTPDTSLYPLHRCKTLHLVRHGQGYHNVAGEKDYGAYMSYDFFDASLTPLGWQQVDNLRKHIWKTGIASRIELVVTSPLMRTMQTAVGVFGGGGYIDGDALPPLMVTGAGKGNHAAITSANCPPFIASECCREQMGLHPCDKRKSINEYRPLFPGIDFSLVETNEDLLWKSDVREGGIELAARGRAFINWLLTRKEKEIAVVSHSSFLIHTLGLFGKDCHSLVRKEIHKAYANCELRSFVIADRSAIGTNFPMTDFSGGTPPGPDVPSDYEDV

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
917	85		14		0.993533
1014	58		41		1.0
1092		75		25	0.996474
1118		20		80	0.995493
1121		20		80	0.995493
1122	80		20		0.995493
1123			80	20	0.995493
1126		20		80	0.995493
1130		80	20		0.995493
1131		80	20		0.995493
1132	80	20			0.995493
1134			20	80	0.995494
1136		20	80		0.995493
1140	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain