SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene95728

Length: 472 nt

UniGene Fasta

>sp_v3.0_unigene95728
CGTCGTGACCTTGGCTGTCACTCAATCATCACGAGCTCTTCCTCATCTCAGTCACTCTTGAAGTTCCCGGTCATGCCAATGTTCACTTCGACTGCAACTCTTGGGTGTATCCCGCCTCTAAATACAATAGAACCCGTGTTTTTTCTCTAATCGGAGCTATCTCCCTGTTAATAGTCCTCCTGCTCTCAAAAAACTGAGGGAGGAGGAGCTGATCAACTTAAGAGGTGAATACAATGGAATGGCGGAGACTGAGAGGAAGGAGTGGGACAGAGTGTATGCCTACGATTTGTATAATGATCTTGGAGACCCAGACAAGAAAATGGAGCTTAGCCGGCCAGTGTTGGGAGGGTCTCCACATTTCCCATATCCTCGGAGGGGCAGAACGGGCCGCCCACGTACAAAGACAGAGCCCGCTACTGAGAGCAGATTGTCATTAGGCATGAGTTTCGACATCTACGTTCCACGAGATGAA

Ace file of the UniGene sp_v3.0_unigene95728

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lipoxygenase n=2 Tax=Solanaceae RepID=Q43800_TOBAC	-	-	7.0e-38	55%
FL-Next	sp=Lipoxygenase; Taxus wallichiana var. chinensis (Chinese yew) (Taxus chinensis).	-	-	0.0	56%
Sma3	Lipoxygenase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Lipoxygenase.	EC:1.13.11.12	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Linoleic acid metabolism	00591	%
Sma3	alpha-Linolenic acid metabolism	00592	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	At1g17420; At1g55020; At1g72520; At3g45140; B1168A08.24; B1168A08.28-1; B1168A08.28-2; CM-LOX1; CM-LOX2; F14C21.3; F14C21.54; F28G4.10; GSVIVT00008869001; GSVIVT00008870001; GSVIVT00013069001; GSVIVT00013309001; GSVIVT00019960001; GSVIVT00022800001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	lipoxygenase activity	GO:0016165	Molecular Function	-
Sma3	phytoene dehydrogenase activity	GO:0016166	Molecular Function	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to fungus	GO:0009620	Biological Process	-
Sma3	jasmonic acid biosynthetic process	GO:0009695	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	response to other organism	GO:0051707	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ketose-bisphosphate aldolase, class-II	IPR000771	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Lipoxygenase	IPR000907	-	-
Sma3	Lipoxygenase, LH2	IPR001024	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Lipoxygenase, plant	IPR001246	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G55020.1	LOX1, ATLOX1 lipoxygenase 1 chr1:20525798-20530143 FORWARD LENGTH=859	7.0e-34	61%
RefSeq	Arabidopsis thaliana	NP_175900.1	lipoxygenase 1 [Arabidopsis thaliana]	8.0e-34	61%
RefSeq	Populus trichocarpa	XP_002328567.1	predicted protein [Populus trichocarpa]	4.0e-39	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: G9L7U0

Fln msg: Overlapping hits, possible frame ERROR between 143 and 140, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 601 aas, your sequence is shorter than subject: 157 - 855

Fln protein: S*PWLSLNHHELFLISVTLEVPGHANVHFDCNSWVYPASKYNRTRxxxSNRSYLPVNSPPALKKLREEELINLRGEYNGMAETERKEWDRVYAYDLYNDLGDPDKKMELSRPVLGGSPHFPYPRRGRTGRPRTKTEPATESRLSLGMSFDIYVPRDE

Protein Length: 158

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCATCACGAGCTCTTCCTCATCTCAGTCACTCTTGAAGTTCCCGGTCATGCCAATGTTCACTTCGACTGCAACTCTTGGGTGTATCCCGCCTCTAAATACAATAGAACCCGTxxxxxxxxxTCTAATCGGAGCTATCTCCCTGTTAATAGTCCTCCTGCTCTCAAAAAACTGAGGGAGGAGGAGCTGATCAACTTAAGAGGTGAATACAATGGAATGGCGGAGACTGAGAGGAAGGAGTGGGACAGAGTGTATGCCTACGATTTGTATAATGATCTTGGAGACCCAGACAAGAAAATGGAGCTTAGCCGGCCAGTGTTGGGAGGGTCTCCACATTTCCCATATCCTCGGAGGGGCAGAACGGGCCGCCCACGTACAAAGACAGAGCCCGCTACTGAGAGCAGATTGTCATTAGGCATGAGTTTCGACATCTACGTTCCACGAGATGAA

Fln Alignment:

AllPine_a_c13586___SLNHHELFLISVTLEVPGHAN--VHFDCNSWVYPASKYNRTRVxFSNRSYLPVNSPPALKKLREEELINLRGEYNGMAETERKEWDRVYAYDLYNDLGDPDKKMELSRPVLGGSPHFPYXXXXXXXXXXXKTEPATESRLSLGMSFDIYVPRDE
G9L7U0_______________NFHKHEFFLNSLTLHLPGAAQDTVHFVCDSWVYPASRYNTDRIxFSNRNYLPHETPPALVKLRNEELVNLRGDGSG----KREEWDRVYDYDLYNDLGNPDKDEEYSRQVLGGSKDFPYPRRGRTGRKPTKTDAASESRVPIQSSLDIFVPRDE

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
230		50		50	1.0
239		25		75	0.996473
257	25		75		0.996473
272		50		50	1.0
332		25		75	0.996473
365		75		25	0.996483
371		25		75	0.996474
404	66		33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain