SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene95309

Length: 1646 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene95309 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Similar to peptide transporter [Arabidopsis thaliana]	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G22540.1	Major facilitator superfamily protein chr1:7964202-7966222 FORWARD LENGTH=557	53%
RefSeq	Arabidopsis thaliana	NP_173670.2	putative peptide/nitrate transporter [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002297740.1	predicted protein [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWU3

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 481 - 604

Fln protein: *FLL*PRELSPNNNTA*NGLLQGLILVTLSASLRSLNGIGIFFFSIYLVALGQGGHKPCLEAFGADQFEENDPVEKKHKSSFFNYWYCGICIGTLITFTVLTYIQDDIGWGLGFGIHAVTMAIALFIFLCGTKFYRHKLPGGSPLTRIVHVFVATFYKWNVSTSYQEENNVAHIEEKEVSIFGPRRQQLRTDQFRFLDKATVEDELDHECKTTFNWRLCTVQEVEEVKDVLGLLPIWMACLMYGVVFAQSPTFFTKQGSTMDRKIGDNFEIPAASLQSFISLSILVLVPVYDRIFVPVARKITKNERGITLLQRIGIGIFTSILSMTVAALTEMKRLQVAKDNGLEDMPHATIPLSIFWLLPQYILFGISDVFTMIGLQEYFYDQMPDTMRSLGIALYLSVFGIGSFLSSFYISILEELSSRGKKQSWFADNLNRAHLDYFYWSLAALSALFLCIYVAFASCFIYKKVEIDICHDDEETT*

Protein Length: 482

Fln nts: TAGTTTCTGCTTTAACCTCGTGAATTGAGCCCGAATAACAACACTGCATGAAATGGGTTGTTACAGGGATTAATTTTGGTCACTTTATCGGCCTCTTTGAGAAGTTTGAATGGTATTGGCATTTTCTTCTTCTCGATCTACCTGGTTGCTCTGGGGCAAGGAGGCCACAAACCCTGCTTAGAAGCATTTGGTGCAGATCAGTTTGAAGAGAACGACCCGGTAGAGAAGAAGCATAAGAGTTCATTCTTCAACTATTGGTATTGTGGTATTTGCATTGGTACTCTTATAACATTCACTGTACTCACGTATATTCAGGACGATATCGGATGGGGCCTAGGATTTGGCATTCATGCTGTGACTATGGCAATAGCACTGTTTATCTTCTTGTGTGGGACAAAATTTTACCGGCATAAACTGCCTGGTGGTAGTCCTCTTACTCGAATTGTCCATGTCTTTGTTGCAACATTTTATAAATGGAACGTTTCCACTTCTTATCAGGAAGAAAATAACGTAGCTCACATTGAAGAAAAAGAAGTTTCGATTTTTGGACCAAGAAGACAGCAATTGCGTACTGATCAGTTTAGGTTTCTTGACAAAGCTACAGTTGAAGATGAGTTGGACCATGAGTGTAAAACAACCTTCAATTGGCGACTATGCACCGTCCAAGAGGTTGAAGAGGTGAAAGATGTTCTTGGGCTGTTACCAATTTGGATGGCATGTTTGATGTATGGGGTTGTCTTTGCACAATCCCCAACATTCTTCACAAAACAGGGAAGCACAATGGATAGAAAGATTGGTGACAACTTTGAGATTCCTGCCGCATCTTTACAAAGCTTCATTAGCCTCTCTATTCTTGTGCTTGTGCCTGTGTATGATCGCATATTTGTTCCAGTGGCCAGAAAAATAACCAAAAATGAGCGTGGTATAACACTGCTTCAGAGGATAGGTATTGGTATATTTACTTCCATTCTTTCTATGACTGTTGCTGCCTTGACAGAAATGAAAAGGCTCCAAGTGGCAAAGGATAATGGATTGGAAGATATGCCCCATGCCACGATTCCATTGAGCATTTTTTGGTTGCTTCCACAATACATACTATTTGGTATATCAGATGTTTTTACAATGATAGGACTGCAAGAATACTTTTATGATCAGATGCCTGACACAATGAGAAGCTTAGGTATCGCTCTCTATTTGAGTGTTTTCGGCATAGGTAGTTTCTTGAGCAGTTTTTATATTTCTATTCTTGAGGAACTAAGTAGCAGAGGGAAGAAGCAGAGCTGGTTTGCTGACAACCTGAACAGAGCTCATTTGGACTACTTTTATTGGTCTCTGGCTGCACTGAGTGCACTGTTCCTATGCATCTATGTTGCATTTGCTAGCTGCTTCATATATAAGAAAGTAGAAATCGATATTTGCCATGATGATGAAGAAACAACCTAA___TAGGCAAAGATATTGATTCTTGGATAATTCAGTTATGAATTCTTCAGTCCTATTTATAAAGTGACATGCATATCTCAAAGCATTGGAAGGATGTATATGCTGGGTATGATTAGTCCCTTCGTACATTGGGCACTGTAACCATCAGGGAATGAACTATTCCCAGGATTCCTGGAATAATATATATTTCCTAGTTTTCTTAAAAG

Fln Alignment:

AllPine_a_c12433___LQGLILVTLSASLRSL-----------------NGIGIFFFSIYLVALGQGGHKPCLEAFGADQFEENDPVEKKHKSSFFNYWYCGICIGTLITFTVLTYIQDDIGWGLGFGIHAVTMAIALFIFLCGTKFYRHKLPGGSPLTRIVHVFVATFYKWNVSTSYQEENNVAHIEEKEVSIFGPRRQQLRTDQFRFLDKATVEDELDHECKTTFNWRLCTVQEVEEVKDVLGLLPIWMACLMYGVVFAQSPTFFTKQGSTMDRKIGDNFEIPAASLQSFISLSILVLVPVYDRIFVPVARKITKNERGITLLQRIGIGIFTSILSMTVAALTEMKRLQVAKDNGLEDMPHATIPLSIFWLLPQYILFGISDVFTMIGLQEYFYDQMPDTMRSLGIALYLSVFGIGSFLSSFYISILEELSSRGKKQSWFADNLNRAHLDYFYWSLAALSALFLCIYVAFASCFIYKKVEIDICHDDEET
A9NWU3_______________LLGLSLLTLSASLSSFRPPPCDITSYTCLKASGSQVGFFFFSLYLVALGQGGHKPCLQAFGADQFDERDPEERKYRSSFFNWWYFGMCSGLVVSISVLMYIQENVGWGLGFGIPTMAMAIALTVFLCGTRLYRHKLPGASPLTRIAQVFVATILKWNVPVPSQGEKNIYVIQEEQLLKGEKSRELLPKNQLRFLDKATVAVDLDYKHKD-INWRLCTVTQVEEAKLVLRLLPIWVACLMYGVVFAQSPTFFTKQGSTMDRKIGENFEIPAASLQSFISLSILVLVPVYDRIFVPVARSITKNERGITLLQRIGIGIFISILSMTVAALTEMKRLQVAKDYGFEDMPHATIPLSIFWLLPQYILFGISDVFTMIGLQEYFYDQMPDTMRSVGIALYLSVFGIGSFLSSFFISIIEELSSGGKEQSWFADNLNRAHLDYFYWFLAALSALFLCIYVTFASCFIYKKVETDIFHDEETT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain