SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene95038

Length: 222 nt

UniGene Fasta

>sp_v3.0_unigene95038
TCAGAAGAAGGTTTCGGAAGCCAGTGGTGATACAAGAGCATGGAATTCTCTATTCATGCATCCTGACACGATAGCAGAGAATGTTGCAAGGAAGTATGGGGTTAGCAAAAGTGATCTATTAAATCCAGAAGCTGATGATCTTGCTGTCCGCATGGCCTTGGGGGAAACACATATCATTGCTGAAACCAAAAAAGCTTTAAGTAGTGAAGGAGTGAACATATT

Ace file of the UniGene sp_v3.0_unigene95038

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA recognition motif (ISS) [Ostreococcus tauri] emb\|CAL51584.1\| RNA recognition motif (ISS) [Ostreococcus tauri]	-	-	3.0e-15	60%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	76%

Source	Gene names
Sma3	AT4g19610; At5g08700; F24J7.162; GSVIVT00030096001; MICPUCDRAFT_16164; MICPUN_81062; OSJNBa0070C17.5; OSJNBa0085I10.19; OSTLU_710; Os04g0611500; OsI_17353; OsJ_16124; Ot04g01860; PHYPADRAFT_207810; POPTRDRAFT_413036;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	0.0	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G19610.1	" nucleotide binding;nucleic acid binding;RNA binding chr4:10677482-10681623 FORWARD LENGTH=816"	3.0e-28	69%
RefSeq	Arabidopsis thaliana	NP_193696.3	nucleotide/nucleic acid binding protein [Arabidopsis thaliana]	4.0e-28	69%
RefSeq	Populus trichocarpa	XP_002303703.1	predicted protein, partial [Populus trichocarpa]	2.0e-30	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HEY0

Fln msg: Distance to subject end: 360 aas, your sequence is shorter than subject: 73 - 808

Fln protein: QKKVSEASGDTRAWNSLFMHPDTIAENVARKYGVSKSDLLNPEADDLAVRMALGETHIIAETKKALSSEGVNI

Protein Length: 74

Fln nts: TCAGAAGAAGGTTTCGGAAGCCAGTGGTGATACAAGAGCATGGAATTCTCTATTCATGCATCCTGACACGATAGCAGAGAATGTTGCAAGGAAGTATGGGGTTAGCAAAAGTGATCTATTAAATCCAGAAGCTGATGATCTTGCTGTCCGCATGGCCTTGGGGGAAACACATATCATTGCTGAAACCAAAAAAGCTTTAAGTAGTGAAGGAGTGAACATATT

Fln Alignment:

AllPine_a_c11656___QKKVSEASGDTRAWNSLFMHPDTIAENVARKYGVSKSDLLNPEADDLAVRMALGETHIIAETKKALSSEGVNI
F6HEY0_______________EKKASEASGDTRAWNSLFMRTDTVVENIARKYGISKSDLLDSQADDLAVRIALGETQVIAETKKALINAGVNI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain