SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene94982

Length: 548 nt

UniGene Fasta

>sp_v3.0_unigene94982
CGTCGTGACCTTGGCTGTCACTCAGCTTTCTATATGAAAATGCTCGGGAGTCAGGAGCGTTGGTTACTGGGCGATTATTTGAGGGGTTTTGAGGGACATTGGAAGAATTTGACTAGATTTGACGGAAAGGTCGGATTAGGCAGGATTTTTGGCGCTTGACGCTCGGTTAAGCTCCAAGAGACGATAAGTAGAAAGAAACTGAAGCCTGAAAGGGTCTCATCATCATGAGAATGGCACTGCATTGGGAGAATGTGGGGGATCTAGCAAACGCCACGCAGCTGACGGGACTGAATGCCGTGAGCCTGATAGCTCTGATCGTCAAAGCGGCCAGTAATGCGCGGATGCATAAGAGGAACTGTCGTCAATTTGCACGGCACCTAAAGCTCATAGGGAACTTGCTGGAACAACTTAAGATTACGGAGCTGAAGAAATATCCTGAAACCAGAGAGCCTCTGGAACAGCTGGAAGATGCGCTGAGACGGTCATATAATCTGTCGACAGTTGCCAGTTAAGCGAGAATACACTCTAGATGAAGAAGAGGAGACATT

Ace file of the UniGene sp_v3.0_unigene94982

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%

Source	Gene names
Sma3	AT4G35920; AT4g35920; At2g17780; GSVIVT00003869001; LOC_Os03g06120; MCA1; MCA2; OSJNBa0011L14.7; Os03g0157300; OsI_10083; OsJ_20556; PHYPADRAFT_134079; PHYPADRAFT_17466; PHYPADRAFT_233853; PHYPADRAFT_4214; POPTRDRAFT_827043; RCOM_0362290; T19K4.50; VITISV

Source	GOs	Term	Type	Identity
Sma3	integral to plasma membrane	GO:0005887	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	transposase activity	GO:0004803	Molecular Function	-
Sma3	transposition, DNA-mediated	GO:0006313	Biological Process	-
Sma3	calcium ion transport	GO:0006816	Biological Process	-
Sma3	mechanosensory behavior	GO:0007638	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transposase, IS4-like	IPR002559	-	0.0	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G35920.1	MCA1 PLAC8 family protein chr4:17012106-17014192 REVERSE LENGTH=421	1.0e-36	73%
RefSeq	Arabidopsis thaliana	NP_849504.2	PLAC8 domain-containing protein [Arabidopsis thaliana]	2.0e-36	73%
RefSeq	Populus trichocarpa	XP_002327738.1	predicted protein [Populus trichocarpa]	3.0e-38	78%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLR4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 310 aas, your sequence is shorter than subject: 96 - 418

Fln protein: MRMALHWENVGDLANATQLTGLNAVSLIALIVKAASNARMHKRNCRQFARHLKLIGNLLEQLKITELKKYPETREPLEQLEDALRRSYNLSTVAS*

Protein Length: 97

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTTCTATATGAAAATGCTCGGGAGTCAGGAGCGTTGGTTACTGGGCGATTATTTGAGGGGTTTTGAGGGACATTGGAAGAATTTGACTAGATTTGACGGAAAGGTCGGATTAGGCAGGATTTTTGGCGCTTGACGCTCGGTTAAGCTCCAAGAGACGATAAGTAGAAAGAAACTGAAGCCTGAAAGGGTCTCATCATC_-_ATGAGAATGGCACTGCATTGGGAGAATGTGGGGGATCTAGCAAACGCCACGCAGCTGACGGGACTGAATGCCGTGAGCCTGATAGCTCTGATCGTCAAAGCGGCCAGTAATGCGCGGATGCATAAGAGGAACTGTCGTCAATTTGCACGGCACCTAAAGCTCATAGGGAACTTGCTGGAACAACTTAAGATTACGGAGCTGAAGAAATATCCTGAAACCAGAGAGCCTCTGGAACAGCTGGAAGATGCGCTGAGACGGTCATATAATCTGTCGACAGTTGCCAGTTAAGCGAGAATACACTCTAGATGAAGAAGAGGAGACATT

Fln Alignment:

AllPine_a_c11503___MRMALHWENVGDLANATQLTGLNAVSLIALIVKAASNARMHKRNCRQFARHLKLIGNLLEQLKITELKKYPETREPLEQLEDALRRSYNL
B8LLR4_______________MRTALHWENVGDLANVTQLTGLNAVSLIALIVKAASNARMHKKNCRQFAQHLKLIGNLLEQLKATELKKYPETREPLEQLEDALRRSYVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain