SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene94951

Length: 1152 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene94951

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Homeobox-leucine zipper protein HOX27; AltName: Full=HD-ZIP protein HOX27; AltName: Full=Homeodomain transcription factor HOX27; AltName: Full=OsHox27 dbj\|BAD17827.1\| putative homeobox-leucine zipper protein [Oryza sativa Japonica Group] gb\|	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	Homeobox protein, putative	-	-	8.097e-17	-

Source	Gene names
Sma3	24.t00025; 25.t00036; 31.t00070; 40.t00018; 57h21.15; ATHB-17; ATHB-2; ATHB-4; ATHB-X; ATHB18; At1g70920; At2g01430; At2g22800; At2g44910; At3g60390; At4g16780; At4g17460; At4g37790; At5g06710; At5g47370; CPHB-3; Crhb10; Crhb2; Crhb3; Crhb9; EcHB1; F2I9.5

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	shade avoidance	GO:0009641	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	response to cytokinin stimulus	GO:0009735	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	response to far red light	GO:0010218	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-
Sma3	HD-ZIP protein, N-terminal	IPR006712	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G37790.1	HAT22 Homeobox-leucine zipper protein family chr4:17768241-17769272 FORWARD LENGTH=278	56%
RefSeq	Arabidopsis thaliana	NP_195493.1	homeobox-leucine zipper protein HAT22 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002322729.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX56

Fln msg:

Fln protein: MFLSRPRDINLVSEKQEGLEEYLSVDLTMAVSAGPGITRSHGSEVGAAQLADTSSSQTAGSLRNFDMNRLPSGTDEEGGGGSSSAVSTVSPFLSDIVVRYGEKDNGTWDGEVNERTHYQDQGLYIQNTESLRNISGNCEEDEGDHVSAGGDGSPPPRKKLRLSKEQSALLEESFREHHTLNPKQKNALAKRLSLKSRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLQREVEELRAIKVAPPCVIAQDFYMPLPAATLTMCPSCERVGSNIDMKRGTLTFAKPSYYLTNLRQPSAAC*

Protein Length: 308

Fln nts: GTCGCAGTTAATTTGTTTCTCTGTATATCTTCACATTGAATATATTCCAGTCAAGGATACATACACACAAT_-_ATGTTCCTGTCAAGGCCGAGAGATATAAATTTAGTCTCTGAGAAGCAAGAGGGACTTGAAGAATATCTCAGTGTAGACCTCACCATGGCAGTCTCAGCTGGCCCAGGGATCACCCGTTCTCATGGCTCTGAAGTGGGTGCTGCTCAGTTGGCCGATACCTCGTCCAGCCAAACAGCTGGGTCCCTGAGAAACTTTGACATGAACAGACTGCCTTCTGGAACAGACGAGGAAGGTGGTGGGGGTTCTTCCTCAGCTGTGAGCACTGTTTCTCCATTTTTATCAGATATTGTGGTTCGTTACGGTGAAAAAGATAATGGGACATGGGATGGAGAGGTCAATGAGAGAACCCATTATCAGGATCAGGGTCTATACATTCAAAATACTGAAAGTCTGAGAAATATATCAGGAAATTGTGAAGAGGATGAAGGAGACCATGTGAGTGCAGGAGGAGATGGCAGTCCTCCTCCTAGGAAGAAACTCCGTCTCTCCAAGGAACAGTCTGCTCTTCTTGAAGAAAGTTTCAGAGAGCACCATACCCTCAATCCGAAGCAAAAGAATGCATTGGCTAAGAGACTAAGCCTGAAGTCACGCCAAGTGGAAGTCTGGTTCCAGAACCGTAGAGCAAGAACTAAGCTGAAACAAACAGAAGTGGACTGTGAGCTTCTGAAACGTTGTTGTGAAACACTAACAGAGGAGAATAGAAGATTGCAAAGGGAAGTTGAGGAGTTGAGAGCTATCAAAGTGGCTCCACCTTGTGTTATTGCTCAGGATTTCTACATGCCTTTACCTGCAGCAACTCTAACAATGTGCCCCTCCTGTGAGAGAGTGGGTAGTAATATTGACATGAAGAGGGGCACTTTGACCTTTGCTAAACCCTCTTACTATTTAACCAACTTAAGGCAACCATCTGCAGCATGTTAG___TACTTGTTCTTATAACTATAAGCATCTCTATATATAAATATCAATTTTGGAAGCAGCATACTCTTAAAGAAAGCTCTCCCGTACTCATGAGAAAGAAGGTGCCATCTTGTATATTTTGAAACTGAACAATTTGTGAAATTTATTGGAAATTAATAACATT

Fln Alignment:

AllPine_a_c11391___RKKLRLSKEQSALLEESFREHHTLNPKQKNALAKRLSLKSRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLQREVEELRAIKVAP-PCVIAQD-FYMPLPAATLTMCPSCERVGSNIDMKRGTLTFAKPSYYLTNLRQPSAAC
A9NX56_______________RKKLRLSKEQSALLEESFREHSTLNPKQKNALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKELQELRALKAAPQPCVIGQDNYYMPLPATTLTMCPSCERVATMENSHSRSLQFSKSQ--ISRFAQQSAAC

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
798	90		10		0.90298
847		12		87	0.992554
904	11			88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain