SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene94703

Length: 240 nt

UniGene Fasta

>sp_v3.0_unigene94703
ATGGGGGAGTAATCGGTCGTCTTTCGTAGGGAGAACTTCAGACGATTTTCGGGCGTTTTCGGGGTATATTAGGATTTTTTCAGTAGCGGCCATGTCTCTCAGACCCATGTCGCGGACTGAGGTCCGAAAGAAGACGTACAAGGTGGCCGTTGATGCAGATGAGGCCCGAAGGAAGCGAGAGGATAATATGGTTGAAATCAGAAAGAGTAAGAGAGAGGAGAGCCTTCTAGTCTGTCCAGA

Ace file of the UniGene sp_v3.0_unigene94703

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	importin alpha 2 [Capsicum annuum]	-	-	2.0e-13	82%
FL-Next	sp=Importin subunit alpha-1b; Oryza sativa subsp. japonica (Rice).	-	-	0.0	80%
Sma3	Importin alpha-like protein	-	-	9.243e-15	-

Source	Gene names
Sma3	AT1G09270; At1g02690; At1g09270; At3g06720; At4g02150; At5g49310; BIMPa; F3E22.14; GSVIVT00022582001; GSVIVT00022647001; GSVIVT00028070001; GSVIVT00033097001; Impa-2; Impa-4; Impa3; KAP1; KAP2; LOC_Os01g14950; LOC_Os05g06350; MICPUCDRAFT_56270; MICPUN_952

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nuclear pore	GO:0005643	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	protein transporter activity	GO:0008565	Molecular Function	-
Sma3	protein import into nucleus	GO:0006606	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	symbiont intracellular protein transport in host	GO:0030581	Biological Process	-
Sma3	induction by symbiont in host of tumor, nodule, or growth	GO:0044005	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Importin-alpha, importin-beta-binding domain	IPR002652	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G06720.1	AT-IMP, ATKAP ALPHA, AIMP ALPHA, IMPA-1, IMPA1 importin alpha isoform 1 chr3:2120559-2123555 FORWARD LENGTH=532	6.0e-17	78%
RefSeq	Arabidopsis thaliana	NP_850524.1	Importin subunit alpha-1 [Arabidopsis thaliana]	7.0e-17	78%
RefSeq	Populus trichocarpa	XP_002315463.1	predicted protein [Populus trichocarpa]	8.0e-18	82%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9SLX0

Fln msg: Distance to subject end: 484 aas, your sequence is shorter than subject: 49 - 534

Fln protein: MSLRPMSRTEVRKKTYKVAVDADEARRKREDNMVEIRKSKREESLLVCP

Protein Length: 50

Fln nts: ATGGGGGAGTAATCGGTCGTCTTTCGTAGGGAGAACTTCAGACGATTTTCGGGCGTTTTCGGGGTATATTAGGATTTTTTCAGTAGCGGCC_-_ATGTCTCTCAGACCCATGTCGCGGACTGAGGTCCGAAAGAAGACGTACAAGGTGGCCGTTGATGCAGATGAGGCCCGAAGGAAGCGAGAGGATAATATGGTTGAAATCAGAAAGAGTAAGAGAGAGGAGAGCCTTCTAGTCTGTCCAGA

Fln Alignment:

AllPine_a_c10652___MSLRPMSRTEVRKKTYKVAVDADEARRKREDNMVEIRKSKREESLL
Q9SLX0_______________MSLRPSERAEVRRSRYKVAVDADEGRRRREDNMVEIRKSRREESLL

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
184	50		50		1.0
189	66		33		1.0
191			33	66	1.0
193	33			66	1.0
194		33	66		1.0
195		33	66		1.0
197			33	66	1.0
198		33	66		1.0
210	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain