SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene94609

Length: 613 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene94609 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cyclophilin 59 n=4 Tax=Arabidopsis RepID=Q6Q151_ARATH	-	-	2.0e-08	78%
FL-Next	tr=Cyclophilin 59; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	78%

Source	Gene names
Sma3	At1g53720; CYP59; F22G10.24; GSVIVT00035738001; Os06g0670500; OsI_24062; OsI_24063; OsJ_22316; OsJ_22317; P0485A07.3; P0485A07.4; P0686E06.39; POPTRDRAFT_862516; VITISV_010985;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G53720.1	ATCYP59, CYP59 cyclophilin 59 chr1:20057012-20059508 FORWARD LENGTH=506	2.0e-11	78%
RefSeq	Arabidopsis thaliana	NP_175776.2	cyclophilin 59 [Arabidopsis thaliana]	2.0e-11	78%
RefSeq	Populus trichocarpa	XP_002307193.1	predicted protein [Populus trichocarpa]	4.0e-11	81%

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
457		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain