SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene94480

Length: 307 nt

UniGene Fasta

>sp_v3.0_unigene94480
CGTCGTGACCTTGGCTGTCACTCAAACGTCGTGACCTTGGCTGTCACTCAATATCATTTCAGTGTGAAGACATGCACGTTGTAGAGAAGAAACTGAAAAAGAGGAATATAAAGTATCTAAGACGTACAGTGGAGGAAGGAAGAGAAAGGATAGATCAACTGTTTTTCCATGATCCAGATTGTTTCATGATAGAGGTCTGCAACTGTGAGAAGCTGACATTGGTTCCTCTGTGTTCTTGTAGCACCCAGATCAGGCTTCCTCCTGATTGGCACAGCCCTCCCATTGCACTTGAGAATGGAGAGCAATC

Ace file of the UniGene sp_v3.0_unigene94480

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lactoylglutathione lyase, putative n=1 Tax=Ricinus communis RepID=B9SPN5_RICCO	-	-	7.0e-21	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Sma3	Lactoylglutathione lyase	-	-	9.61e-11	-

Source	Gene names
Sma3	AT1G15380; AT1G80160; At1g15380; At1g80160; At2g28420; F18B13.24; F9L1.33; GSVIVT00000378001; GSVIVT00000379001; GSVIVT00016866001; GSVIVT00028685001; GSVIVT00036876001; Os05g0171900; Os07g0657100; OsI_18636; OsI_27170; OsJ_17296; OsJ_25424; P0047B07.119;

Source	GOs	Term	Type	e value	Identity
Sma3	lyase activity	GO:0016829	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glyoxalase/fosfomycin resistance/dioxygenase	IPR004360	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G28420.1	Lactoylglutathione lyase / glyoxalase I family protein chr2:12157946-12158500 FORWARD LENGTH=184	9.0e-28	59%
RefSeq	Arabidopsis thaliana	NP_029429.1	lactoylglutathione lyase / glyoxalase I-like protein [Arabidopsis thaliana]	1.0e-27	59%
RefSeq	Populus trichocarpa	XP_002313326.1	predicted protein [Populus trichocarpa]	2.0e-27	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNA7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 28 aas, your sequence is shorter than subject: 101 - 204

Fln protein: S*PWLSLKRRDLGCHSISFQCEDMHVVEKKLKKRNIKYLRRTVEEGRERIDQLFFHDPDCFMIEVCNCEKLTLVPLCSCSTQIRLPPDWHSPPIALENGEQ

Protein Length: 102

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACGTCGTGACCTTGGCTGTCACTCAATATCATTTCAGTGTGAAGACATGCACGTTGTAGAGAAGAAACTGAAAAAGAGGAATATAAAGTATCTAAGACGTACAGTGGAGGAAGGAAGAGAAAGGATAGATCAACTGTTTTTCCATGATCCAGATTGTTTCATGATAGAGGTCTGCAACTGTGAGAAGCTGACATTGGTTCCTCTGTGTTCTTGTAGCACCCAGATCAGGCTTCCTCCTGATTGGCACAGCCCTCCCATTGCACTTGAGAATGGAGAGCAATC

Fln Alignment:

AllPine_a_c9806___ISFQCEDMHVVEKKLKKRNIKYLRRTVEEGRERIDQLFFHDPDCFMIEVCNCEKLTLVPLC-SCSTQIRLPPDWHSPPI
B8LNA7_______________ISFQCEDVQVVERKLQEMNVKYVKRIVEDGGIYVDQLFIHDPDGFMVEVCNCENFPVEPIVGSAPACVRRPSHIPSPPI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain