SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81699

Length: 405 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene81699
AGTCTCAAAACCGTTATTCAAAGGTTGCTAAAGATTGGGGTTGGCGTGAATTTATCACCTTGACTAGTCTCTTTGACCAAGATTCAGGGTACTTGGTGCAAGACACGGTGGTCTTTTCTGCAGAGGTTCTCATTTTAAAGGAGACCTCTATAATGCAGGAGTGCACAGATCATGAAGTAGATTCCAGTGTCTCTAAAAGTGAAGCTGGAAGAACTTTAAACCGAGGTACCTTCACATGGAAGGTCGAGAACTTTTTAGCTTTTAAGGAAATCATGGAGACAAGGAAAATCTTTAGCAAATTCTTTCAGGCCGGCGGTTGTGAGCTACGCATAGGTGTCTACGAGTCATTTGATACTCTATGCATATACTTGGAAAGTGATCAATCTGTTGGAACCAGTCGTCGTT

Ace file of the UniGene sp_v3.0_unigene81699 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TRAF-like protein [Arabidopsis thaliana] dbj\|BAF03523.1\| CGS1 mRNA stability 1 [Arabidopsis thaliana] gb\|AEC07688.1\| TRAF-like protein [Arabidopsis thaliana]	-	-	0.0	80%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	81%

Source	Gene names
Sma3	At2g25320; At2g25330; CMS1; GSVIVT00016965001; GSVIVT00032679001; MICPUCDRAFT_35799; OsI_08052; OsJ_07511; PHYPADRAFT_188453; POPTRDRAFT_561919; POPTRDRAFT_762161; VITISV_027395;

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	amino acid binding	GO:0016597	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	MATH	IPR002083	-	-
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	TRAF-type	IPR013322	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G25320.1	TRAF-like family protein chr2:10781951-10788065 REVERSE LENGTH=1673	80%
RefSeq	Arabidopsis thaliana	NP_180104.3	TRAF-like protein [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002308674.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9SU81

Fln msg: Distance to subject end: 1070 aas, your sequence is shorter than subject: 134 - 1677

Fln protein: SQNRYSKVAKDWGWREFITLTSLFDQDSGYLVQDTVVFSAEVLILKETSIMQECTDHEVDSSVSKSEAGRTLNRGTFTWKVENFLAFKEIMETRKIFSKFFQAGGCELRIGVYESFDTLCIYLESDQSVGTSRR

Protein Length: 135

Fln nts: AGTCTCAAAACCGTTATTCAAAGGTTGCTAAAGATTGGGGTTGGCGTGAATTTATCACCTTGACTAGTCTCTTTGACCAAGATTCAGGGTACTTGGTGCAAGACACGGTGGTCTTTTCTGCAGAGGTTCTCATTTTAAAGGAGACCTCTATAATGCAGGAGTGCACAGATCATGAAGTAGATTCCAGTGTCTCTAAAAGTGAAGCTGGAAGAACTTTAAACCGAGGTACCTTCACATGGAAGGTCGAGAACTTTTTAGCTTTTAAGGAAATCATGGAGACAAGGAAAATCTTTAGCAAATTCTTTCAGGCCGGCGGTTGTGAGCTACGCATAGGTGTCTACGAGTCATTTGATACTCTATGCATATACTTGGAAAGTGATCAATCTGTTGGAACCAGTCGTCGTT

Fln Alignment:

GFIJCBT03GULPB___SQNRYSKVAKDWGWREFITLTSLFDQDSGYLVQDTVVFSAEVLILKETSIMQECTDHEVDSSVSK--SEAGRTLNRGTFTWKVENFLAFKEIMETRKIFSKFFQAGGCELRIGVYESFDTLCIYLESDQSVGT
A9SU81_______________SQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDMVVFSAEVLILKETSTMQELSEYEGEAAASGGGSDTGRIVNRGTFTWRVENFLAFKEIMETRKIFSKFFQAGGCELRIGVYESFDTLCIYLESDQSIGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain