SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81628

Length: 167 nt

UniGene Fasta

>sp_v3.0_unigene81628
CTTGCTCATCTGCAGACTGAAGCATGGCTCGCAGATGAGCAAGTAAGGACCTTGAAAAAGCAAAGTACATTTTAAAGTCAACTGGCAGCAAAGACTGTTCCCAAGGGCCTGCACTGTCTGTCCATGCGATTGACCAATGATTATTACTTGCTTCCTCTTGAAAAGTG

Ace file of the UniGene sp_v3.0_unigene81628

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycosyltransferase n=1 Tax=Populus trichocarpa RepID=B9IC41_POPTR	-	-	2.0e-14	81%
FL-Next	sp=Polygalacturonate 4-alpha-galacturonosyltransferase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	72%
Sma3	Glycosyltransferase	-	-	5.998e-06	-

Source	Gene names
Sma3	At3g61130; At5g47780; GSVIVT00026307001; LGT1; OJ1254_E07.22; OJ1663_H12.25; Os06g0712500; Os09g0531800; Os09g0531900; OsI_24438; OsI_32147; OsJ_22634; OsJ_30109; OsJ_30110; P0515E01.7; PHYPADRAFT_177102; PHYPADRAFT_232719; POPTRDRAFT_1098079; POPTRDRAFT_

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	-
Sma3	polygalacturonate 4-alpha-galacturonosyltransferase activity	GO:0047262	Molecular Function	-
Sma3	homogalacturonan biosynthetic process	GO:0010289	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glycosyl transferase, family 8	IPR002495	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G61130.1	GAUT1, LGT1 galacturonosyltransferase 1 chr3:22622399-22625514 FORWARD LENGTH=673	5.0e-16	72%
RefSeq	Arabidopsis thaliana	NP_191672.1	alpha-1,4-galacturonosyltransferase 1 [Arabidopsis thaliana]	7.0e-16	72%
RefSeq	Populus trichocarpa	XP_002302550.1	glycosyltransferase [Populus trichocarpa]	1.0e-19	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LE59

Fln msg: Distance to subject end: 322 aas, your sequence is shorter than subject: 55 - 673

Fln protein: LAHLQTEAWLADEQVRTLKKQSTF*SQLAAKTVPKGLHCLSMRLTNDYYLLPLEK

Protein Length: 56

Fln nts: CTTGCTCATCTGCAGACTGAAGCATGGCTCGCAGATGAGCAAGTAAGGACCTTGAAAAAGCAAAGTACATTTTAAAGTCAACTGGCAGCAAAGACTGTTCCCAAGGGCCTGCACTGTCTGTCCATGCGATTGACCAATGATTATTACTTGCTTCCTCTTGAAAAGTG

Fln Alignment:

GDTE5QK01EP3M0___AHLQTEAWLADEQVRTLKKQSTF*SQLAAKTVPKGLHCLSMRLTNDYYLLPLEK
Q9LE59_______________AMLQT----ADEQVRSLKKQSTFLAQLAAKTIPNPIHCLSMRLTIDYYLLSPEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain