SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81413

Length: 125 nt

UniGene Fasta

>sp_v3.0_unigene81413
TGTCGCCGGGGGGAATGGCAGATTTGTGCAGGCCTTGGTGGAGAATTTGCCTATTTTCTATGACAGGACTGTTAGGGTTGTCAGGTATGGGAGTGATGGGGTGCAGGTGGTAGCTGGGGGACAGG

Ace file of the UniGene sp_v3.0_unigene81413

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Amine oxidase, putative n=1 Tax=Ricinus communis RepID=B9SUC7_RICCO	-	-	2.0e-09	71%
FL-Next	sp=Lysine-specific histone demethylase 1 homolog 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	66%

Source	Gene names
Sma3	FLD; GSVIVT00018140001; GSVIVT00031221001; HDMA901; HDMA902; OsJ_15766; POPTRDRAFT_228111; POPTRDRAFT_353344; RCOM_0721980;

Source	GOs	Term	Type	e value	Identity
Sma3	electron carrier activity	GO:0009055	Molecular Function	0.0	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3	Amine oxidase	IPR002937	-	-
Sma3	SWIRM domain	IPR007526	-	-
Sma3	Peptidase C14, ICE, catalytic subunit p20, active site	IPR016129	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G10390.1	FLD Flavin containing amine oxidoreductase family protein chr3:3229293-3232345 FORWARD LENGTH=884	2.0e-12	66%
RefSeq	Arabidopsis thaliana	NP_187650.4	lysine-specific histone demethylase 1 [Arabidopsis thaliana]	3.0e-12	66%
RefSeq	Populus trichocarpa	XP_002315324.1	hypothetical protein POPTRDRAFT_228111, partial [Populus trichocarpa]	7.0e-14	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9CAE3

Fln msg: Distance to subject end: 373 aas, your sequence is shorter than subject: 41 - 789

Fln protein: VAGGNGRFVQALVENLPIFYDRTVRVVRYGSDGVQVVAGGQ

Protein Length: 42

Fln nts: TGTCGCCGGGGGGAATGGCAGATTTGTGCAGGCCTTGGTGGAGAATTTGCCTATTTTCTATGACAGGACTGTTAGGGTTGTCAGGTATGGGAGTGATGGGGTGCAGGTGGTAGCTGGGGGACAGG

Fln Alignment:

GDTE5QK01CSWRD___GGNGRFVQALVENLPIFYDRTVRVVRYGSDGVQVVAGGQ
Q9CAE3_______________GGNGRLVQALAENVPILYEKTVQTIRYGSNGVKVTAGNQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain