SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81375

Length: 128 nt

UniGene Fasta

>sp_v3.0_unigene81375
CTTAGGAACAGGCTGAAGTATGCCCTCACATACCGTATAGCCATTGTAATGCAGAGACTTATTTCTGTTGATGGAAAAGTGAGGACAGACAAATGCTATCCTGCAGGGTTTATGGATGTCCTGTCGAT

Ace file of the UniGene sp_v3.0_unigene81375

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40s ribosomal protein s4, putative [Toxoplasma gondii RH]	-	-	2.0e-11	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	40S ribosomal protein S4	-	-	3.858e-17	-

Source	Gene names
Sma3	At2g17360; At5g07090; At5g58420; BiRP1; CHLREDRAFT_188837; F5J6.12; GSVIVT00001285001; GSVIVT00024035001; MICPUCDRAFT_36856; MICPUN_90851; MOJ9.26; MQJ2_10; OJ1393_A07.10; OSTLU_18526; Os01g0358400; Os02g0105900; Os05g0368300; OsI_01884; OsI_05494; OsI_19

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S4e	IPR000876	-	-
Sma3	RNA-binding S4 domain	IPR002942	-	-
Sma3	KOW	IPR005824	-	-
Sma3	Ribosomal protein S4e, N-terminal	IPR013843	-	-
Sma3	Ribosomal protein S4e, central	IPR013845	-	-
Sma3	Ribosomal protein S4e, N-terminal, conserved site	IPR018199	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G17360.1	Ribosomal protein S4 (RPS4A) family protein chr2:7546598-7548138 FORWARD LENGTH=261	4.0e-16	79%
RefSeq	Arabidopsis thaliana	NP_001189539.1	40S ribosomal protein S4-1 [Arabidopsis thaliana]	3.0e-16	79%
RefSeq	Populus trichocarpa	XP_002308235.1	predicted protein [Populus trichocarpa]	6.0e-16	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NNW1

Fln msg: Distance to subject end: 171 aas, your sequence is shorter than subject: 42 - 263

Fln protein: LRNRLKYALTYRIAIVMQRLISVDGKVRTDKCYPAGFMDVLS

Protein Length: 43

Fln nts: CTTAGGAACAGGCTGAAGTATGCCCTCACATACCGTATAGCCATTGTAATGCAGAGACTTATTTCTGTTGATGGAAAAGTGAGGACAGACAAATGCTATCCTGCAGGGTTTATGGATGTCCTGTCGAT

Fln Alignment:

GDTE5QK01BNN7R___LRNRLKYALTYR--IAIVMQRLISVDGKVRTDKCYPAGFMDVLS
A9NNW1_______________IRNRLKYALTYREVIAIVMQRLISVDGKVRTDKCYPAGFMDVLS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain