SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81331

Length: 107 nt

UniGene Fasta

>sp_v3.0_unigene81331
TCCAGCTGGATTGTCACTAGCAGCAGAATCAGCTAAGCGAGGCCTGACTGTTGGTCTTGTTGGGCCTGACATGCCATTTACTAATAACTATGGTGTGTGGGAGGATG

Ace file of the UniGene sp_v3.0_unigene81331

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lycopene epsilon cyclase 3B n=4 Tax=Triticeae RepID=C1IP75_WHEAT	-	-	6.0e-12	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Lycopene epsilon-cyclase	-	-	1.053e-24	-

Source	Gene names
Sma3	At5g57030; B1097D05.16; CRTL-E-1; CSLECY; CitLCYe; GSVIVT00016526001; LCYE; LUT2; Lcy-e; MHM17.16; MtrDRAFT_AC174465g15v2; OSTLU_43511; Os01g0581300; OsI_02559; OsJ_02352; PHYPADRAFT_114731; PHYPADRAFT_139090; POPTRDRAFT_653266; RCOM_1047680; VITISV_01339

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	GO:0016705	Molecular Function	-
Sma3	lycopene epsilon cyclase activity	GO:0045435	Molecular Function	-
Sma3	carotenoid biosynthetic process	GO:0016117	Biological Process	-
Sma3	xanthophyll biosynthetic process	GO:0016123	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lycopene cyclase-type, FAD-binding	IPR008671	-	-
Sma3	Lycopene cyclase, beta/epsilon	IPR010108	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G57030.1	LUT2 Lycopene beta/epsilon cyclase protein chr5:23077398-23079818 FORWARD LENGTH=524	2.0e-15	85%
RefSeq	Arabidopsis thaliana	NP_200513.1	lycopene epsilon cyclase [Arabidopsis thaliana]	3.0e-15	85%
RefSeq	Populus trichocarpa	XP_002309210.1	predicted protein, partial [Populus trichocarpa]	2.0e-17	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVU1

Fln msg: Distance to subject end: 325 aas, your sequence is shorter than subject: 35 - 512

Fln protein: PAGLSLAAESAKRGLTVGLVGPDMPFTNNYGVWED

Protein Length: 36

Fln nts: TCCAGCTGGATTGTCACTAGCAGCAGAATCAGCTAAGCGAGGCCTGACTGTTGGTCTTGTTGGGCCTGACATGCCATTTACTAATAACTATGGTGTGTGGGAGGATG

Fln Alignment:

GDTE5QK01BK7H6___PAGLSLAAESAKRGLTVGLVGPDMPFTNNYGVWED
A9NVU1_______________PAGLSLAAESAKQGLTVGLIGPDMPFTNNYGVWED

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain