SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81110

Length: 253 nt

UniGene Fasta

>sp_v3.0_unigene81110
ATCATAGATGTGTCTGGCCTGGATAAAACCCCAGAGGAACGAAAGAAGGCAATCAAGCATCTTGGTCAGGCGTGTCGAGATTGGGGTTTCTTTCAGGTAGTTAATCATGGCATCCCAGAATCTCTGATTTCCAGTATGTTAGATGCAGCATATCAATTCTTCTCCCTCTCGTCAGAAGNGAAGATGAAATATGAGACCAAAGATGTGTTGAATCCGGTTAGATATGGCACAAGCTTCAATGCTAAAGTGGATC

Ace file of the UniGene sp_v3.0_unigene81110

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucoanthocyanidin dioxygenase, putative n=1 Tax=Ricinus communis RepID=B9S9D4_RICCO	-	-	2.0e-18	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%

Source	Gene names
Sma3	RCOM_0884210; RCOM_0884230;

Source	GOs	Term	Type	e value	Identity
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G44800.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein chr2:18467004-18468551 FORWARD LENGTH=357	1.0e-19	50%
RefSeq	Arabidopsis thaliana	NP_182007.2	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana]	2.0e-19	50%
RefSeq	Populus trichocarpa	XP_002323963.1	predicted protein [Populus trichocarpa]	3.0e-24	49%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQA3

Fln msg: Distance to subject end: 220 aas, your sequence is shorter than subject: 84 - 361

Fln protein: IIDVSGLDKTPEERKKAIKHLGQACRDWGFFQVVNHGIPESLISSMLDAAYQFFSLSSEEKMKYETKDVLNPVRYGTSFNAKVD

Protein Length: 85

Fln nts: ATCATAGATGTGTCTGGCCTGGATAAAACCCCAGAGGAACGAAAGAAGGCAATCAAGCATCTTGGTCAGGCGTGTCGAGATTGGGGTTTCTTTCAGGTAGTTAATCATGGCATCCCAGAATCTCTGATTTCCAGTATGTTAGATGCAGCATATCAATTCTTCTCCCTCTCGTCAGAAGaGAAGATGAAATATGAGACCAAAGATGTGTTGAATCCGGTTAGATATGGCACAAGCTTCAATGCTAAAGTGGATC

Fln Alignment:

GDTE5QK01ECVNW___IIDVSGLDKTPEERKKAIKHLGQACRDWGFFQVVNHGIPESLISSMLDAAYQFFSLSSEEKMKYETKDVLNPVRYGTSFNAKVD
A9NQA3_______________IIDLSAMDKSPEERLEAIKYLGQACAHWGFFQVVNHGIQESLITSMLEAAHQFFSLSSQEKLKYESTDVLNPVRYGTSFNAKVD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain