SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81088

Length: 121 nt

UniGene Fasta

>sp_v3.0_unigene81088
GGGCGTTAAGGGGTTTCTGGAAGGAGGGATTGCCTCGGTTGTCGCAGGATAAAAGTGTACACATCCTCTGGATCTGATAAAGGTGCGCATGCAGCTACAAGGCGAGCAAACTGTTCGCCCG

Ace file of the UniGene sp_v3.0_unigene81088

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative mitochondrial dicarboxylate carrier protein n=1 Tax=Trifolium pratense RepID=Q2PEQ8_TRIPR	-	-	4.0e-08	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	Mitochondrial dicarboxylate carrier protein, putative	-	-	1.735e-16	-

Source	Gene names
Sma3	AT4G24570; AT4g24570; At2g22500; At2g22500/F14M13.10; At4g24570; At5g09470; F22K18.230; GSVIVT00011464001; OJ1005_D12.15; OJ1113_A10.6; OJ1666_A04.30; Os09g0465400; OsI_29614; OsJ_27682; OsJ_29672; POPTRDRAFT_258215; POPTRDRAFT_551644; POPTRDRAFT_577323;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	mitochondrial transport	GO:0006839	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial brown fat uncoupling protein	IPR002030	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G22500.1	UCP5, ATPUMP5, DIC1 uncoupling protein 5 chr2:9563531-9564472 REVERSE LENGTH=313	2.0e-11	82%
RefSeq	Arabidopsis thaliana	NP_179836.1	uncoupling protein 5 [Arabidopsis thaliana]	3.0e-11	82%
RefSeq	Populus trichocarpa	XP_002306542.1	predicted protein [Populus trichocarpa]	2.0e-12	77%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSC7

Fln msg: Distance to subject end: 274 aas, atg_distance in limit (1-15): atg_distance = 2, W2: There is no M at the beginning, your sequence is shorter than subject: 40 - 314

Fln protein: GVKGFLEGGIASVVAG*KCTHPLDLIKVRMQLQGEQTVRP

Protein Length: 41

Fln nts: GGGCGTTAAGGGGTTTCTGGAAGGAGGGATTGCCTCGGTTGTCGCAGGATAAAAGTGTACACATCCTCTGGATCTGATAAAGGTGCGCATGCAGCTACAAGGCGAGCAAACTGTTCGCCCG

Fln Alignment:

GDTE5QK01DBWC0___GVKGFLEGGIASVVAG*KCTHPLDLIKVRMQLQGEQTVRP
C0PSC7_______________GVKGFVEGGIASVVAGCS-THPLDLIKVRMQLQGEQNVRP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain