SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80773

Length: 129 nt

UniGene Fasta

>sp_v3.0_unigene80773
GCTGCAGGTATGCAAAGTTTCTGTATAGGCGTAGGCTCCTTGAATCCCAGTGCCTATACAGAAACTTTGCATACCTGCAGCTGCTCATCAGGGCAAGGATGTAATTGGTGCAGCAGAAACTGGGTCAGG

Ace file of the UniGene sp_v3.0_unigene80773

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=DEAD-box ATP-dependent RNA helicase 13; Oryza sativa subsp. japonica (Rice).	-	-	0.0	88%

Source	Gene names
Sma3	GSVIVT00020384001; LOC_Os04g43140; OSIGBa0157K09-H0214G12.9; OSJNBb0065L13.12; Os04g0510400; OsI_016050; OsI_16604; OsJ_014797; OsJ_15428; POPTRDRAFT_821811; RCOM_1024260; VITISV_038405;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: A3AVH5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 584 aas, your sequence is shorter than subject: 42 - 832

Fln protein: LQVCKVSV*A*AP*IPVPIQKLCIPAAAHQGKDVIGAAETGS

Protein Length: 43

Fln nts: GCTGCAGGTATGCAAAGTTTCTGTATAGGCGTAGGCTCCTTGAATCCCAGTGCCTATACAGAAACTTTGCATACCTGCAGCTGCTCATCAGGGCAAGGATGTAATTGGTGCAGCAGAAACTGGGTCAGG

Fln Alignment:

GDTE5QK01EZWSP___PVPIQKLCIPAAAHQGKDVIGAAETGS
A3AVH5_______________PTPIQKACFPAAAHQGKDVIGAAETGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain