SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80336

Length: 183 nt

UniGene Fasta

>sp_v3.0_unigene80336
CCTCACAGAAATCTATCTAAGCGACTGCTCCGCCCTGTAGGGGCTCCCAGATTCAGCTGGGAACTGGACGAACCTCAGAAAAATCTATCTAAGCAGCTGCTCCGCCCTGCAGGGGCTCCCAGATTCAGCTGGGAACTGGACGAACCTCGAAGAAATCAACGTGAGGAACTGCTCCACCCTGCA

Ace file of the UniGene sp_v3.0_unigene80336

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Disease resistance protein-like n=3 Tax=Arabidopsis thaliana RepID=Q9FI14_ARATH	-	-	9.0e-10	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G44510.1	TAO1 target of AVRB operation1 chr5:17929673-17934188 REVERSE LENGTH=1187	6.0e-14	53%
RefSeq	Arabidopsis thaliana	NP_199264.1	target of AVRB operation1 protein [Arabidopsis thaliana]	8.0e-14	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: Distance to subject end: 84 aas, your sequence is shorter than subject: 60 - 1071

Fln protein: LTEIYLSDCSAL*GLPDSAGNWTNLRKIYLSSCSALQGLPDSAGNWTNLEEINVRNCSTL

Protein Length: 61

Fln nts: CCTCACAGAAATCTATCTAAGCGACTGCTCCGCCCTGTAGGGGCTCCCAGATTCAGCTGGGAACTGGACGAACCTCAGAAAAATCTATCTAAGCAGCTGCTCCGCCCTGCAGGGGCTCCCAGATTCAGCTGGGAACTGGACGAACCTCGAAGAAATCAACGTGAGGAACTGCTCCACCCTGCA

Fln Alignment:

GD4IA4404IVUH1___LTEIYLSDCSAL*GLPDSAGNWTNLRKIYLSSCSALQGLPDSAGNWTNLEEINVRNCSTL
C0PQE2_______________LQTLYLSGCSTLQTLPDSVGNLTGLQTLYLSGCSTLQTLPDSVGNLTGLQTLNLDRCSTL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain