SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80309

Length: 349 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene80309
GGGGCGATCATTGCTGGTGCTTCGAATCCTCTCAATTTCATCCTCCAAAGCTGATGGGTTTGGAGAAAGCAAAGGAGTTTACTGTTGAATTGTTGAAGAGAGGTAAGGAGGAGTTATGGTGTTTCGATCCAACGAAGGTTGCACCTTTGCTGGGCCTCGCAGATTACATTGCATTCAGAGAGAACTGAAAAGGCCTGGTAAAATCATTCCTATGTGTGTTTTGTTTTATGTTTGTTGTGCTTTCTTTCTTGGTTGAACATGAAAATACGCCATCGTCGTTTGTTAAGTTATAGCGAATGTAAATATGTATACATAGCCAACTCTAATACAACATAAAGGCATATCTTCA

Ace file of the UniGene sp_v3.0_unigene80309 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Geranyl diphosphate synthase n=1 Tax=Abies grandis RepID=Q8LKJ2_ABIGR	-	-	2.0e-13	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Geranyl diphosphate synthase	-	-	1.117e-11	-

Source	Gene names
Sma3	GGPPS; GPPS1; GPPS2; GPPS3; IDS2; IDS5; ggpps; ggps;

Source	GOs	Term	Type	e value	Identity
Sma3	farnesyltranstransferase activity	GO:0004311	Molecular Function	0.0	-
Sma3	isoprenoid biosynthetic process	GO:0008299	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Polyprenyl synthetase	IPR000092	-	-
Sma3	Terpenoid synthase	IPR008949	-	-
Sma3	Polyprenyl synthetase-related	IPR017446	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRU8

Fln msg: your sequence is shorter than subject: 62 - 382

Fln protein: GDHCWCFESSQFHPPKLMGLEKAKEFTVELLKRGKEELWCFDPTKVAPLLGLADYIAFREN*

Protein Length: 63

Fln nts: GGGGCGATCATTGCTGGTGCTTCGAATCCTCTCAATTTCATCCTCCAAAGCTGATGGGTTTGGAGAAAGCAAAGGAGTTTACTGTTGAATTGTTGAAGAGAGGTAAGGAGGAGTTATGGTGTTTCGATCCAACGAAGGTTGCACCTTTGCTGGGCCTCGCAGATTACATTGCATTCAGAGAGAACTGA___AAAGGCCTGGTAAAATCATTCCTATGTGTGTTTTGTTTTATGTTTGTTGTGCTTTCTTTCTTGGTTGAACATGAAAATACGCCATCGTCGTTTGTTAAGTTATAGCGAATGTAAATATGTATACATAGCCAACTCTAATACAACATAAAGGCATATCTTCA

Fln Alignment:

GDTE5QK01C0DWY___PKLMGLEKAKEFTVELLKRGKEELWCFDPTKVAPLLGLADYIAFREN
C0PRU8_______________PKLMGLEKAKQFAVELLDRAKENLSCFDPMKAAPLLGLADYIAFRQN

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain