SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80036

Length: 306 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene80036
AGTGTGCCAATGTTACTCGGGTTTACGGCTTCTATGACGAATGTAAGCGACGATGCAACATTAAGGTCTGGAAGGGCTTTATCGATACGTTCAACTGCCTCCCGATCGCTGCCATTGTTGCGGGTAAGATTTTCTGCGTTCACGGCGGACTTTCGCCCAGTTTGTCGCACATGGATGATATTCGGGGCATTGCCCGACCTACAGATGTTCCCGACTATGGGTTGCTGAATGACCTCTTATGGAGTGACCCCGCTGATATGGAGGAAGATTGGGAACCCAATGAAAGGGGTGTGAGCTATTAGACTT

Ace file of the UniGene sp_v3.0_unigene80036 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein phosphatase n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6HCN9_PENCW	-	-	98%
FL-Next	sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	63%
Sma3	Serine/threonine protein phosphatase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoprotein phosphatase.	EC:3.1.3.16	-	0.0	-

Source	Gene names
Sma3	46C02.14; AT2G39840; At1g59830; At1g64040; At1g69960; At2g29400; At2g39840; At2g42500; At3g05580; At3g46820; At3g58500; At4g11240; At5g27840; At5g43380; At5g59160; B1051E10.26; B1144B06.13; CHLREDRAFT_160030; CHLREDRAFT_193562; EP7; F14P22.90; F16P2.22; F

Source	GOs	Term	Type	Identity
Sma3	protein phosphatase type 2A complex	GO:0000159	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	protein dephosphorylation	GO:0006470	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S16	IPR000307	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G64040.1	TOPP3 type one serine/threonine protein phosphatase 3 chr1:23758626-23760274 REVERSE LENGTH=322	7.00649e-44	62%
RefSeq	Arabidopsis thaliana	NP_176587.1	serine/threonine-protein phosphatase PP1 isozyme 3 [Arabidopsis thaliana]	8.96831e-44	62%
RefSeq	Populus trichocarpa	XP_002325331.1	predicted protein, partial [Populus trichocarpa]	4.2039e-45	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPR8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 94 aas, your sequence is shorter than subject: 100 - 318

Fln protein: CANVTRVYGFYDECKRRCNIKVWKGFIDTFNCLPIAAIVAGKIFCVHGGLSPSLSHMDDIRGIARPTDVPDYGLLNDLLWSDPADMEEDWEPNERGVSY*

Protein Length: 101

Fln nts: AGTGTGCCAATGTTACTCGGGTTTACGGCTTCTATGACGAATGTAAGCGACGATGCAACATTAAGGTCTGGAAGGGCTTTATCGATACGTTCAACTGCCTCCCGATCGCTGCCATTGTTGCGGGTAAGATTTTCTGCGTTCACGGCGGACTTTCGCCCAGTTTGTCGCACATGGATGATATTCGGGGCATTGCCCGACCTACAGATGTTCCCGACTATGGGTTGCTGAATGACCTCTTATGGAGTGACCCCGCTGATATGGAGGAAGATTGGGAACCCAATGAAAGGGGTGTGAGCTATTAGACTT

Fln Alignment:

GD4IA4404IXX50___CANVTRVYGFYDECKRRCNIKVWKGFIDTFNCLPIAAIVAGKIFCVHGGLSPSLSHMDDIRGIARPTDVPDYGLLNDLLWSDPADMEEDWEPNERGVSY
C0PPR8_______________CASINRIYGFYDECKRRFNVRLWKLFTDCFNCLPVAALIDEKILCMHGGLSPELNSLDQIRNIPRPTDVPDQGLLCDLLWSDPSNEIQGWGSNDRGVSY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain