SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79845

Length: 289 nt

UniGene Fasta

>sp_v3.0_unigene79845
CTTCGTCCTGGTTTTACAGAAGGTACAGAAGCTTTGCAAAAACAGAGAGGAAAAAGTCCGCGGATAAATCTTCGTGGATGCTGACTTCATTTCACAAGTTGGGGTTCAATGAATATGAGATTCTGGATTACTTGGATGAAGATAATGTTATTGGGAGCGGCGGATCTGGTAAGGTTTACAAGGCGACATTGAGCAATGGGGAGACTGTGGCCATTAAAAGGCTTTTCAGCAGTACTAAAGGCGATGCTTCTAATGATAATGGTTTCAAAGCAGAGGTGGACATACTGGG

Ace file of the UniGene sp_v3.0_unigene79845

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Clavata-like receptor n=1 Tax=Picea glauca RepID=Q19AV8_PICGL	-	-	5.0e-33	74%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	74%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	2.894e-06	-

Source	Gene names
Sma3	AT1G28440; AT4G28490; At1g28440; At4g28490; CLAVATA1; CLL3; CLV; F21O9.180; GSVIVT00003044001; LRPKm1; LRR-RLK; MtrDRAFT_AC158497g45v2; OSJNBa0010K01.7; Os01g0239700; OsI_01100; OsJ_01050; PHYPADRAFT_141749; POPTRDRAFT_1111905; POPTRDRAFT_718257; POPTRDRA

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G28440.1	HSL1 HAESA-like 1 chr1:9996914-10000171 FORWARD LENGTH=996	5.0e-27	54%
RefSeq	Arabidopsis thaliana	NP_174166.1	receptor-like protein kinase HSL1 [Arabidopsis thaliana]	6.0e-27	54%
RefSeq	Populus trichocarpa	XP_002329803.1	predicted protein [Populus trichocarpa]	2.0e-29	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: Distance to subject end: 252 aas, your sequence is shorter than subject: 95 - 998

Fln protein: SSWFYRRYRSFAKTERKKSADKSSWMLTSFHKLGFNEYEILDYLDEDNVIGSGGSGKVYKATLSNGETVAIKRLFSSTKGDASNDNGFKAEVDIL

Protein Length: 96

Fln nts: CTTCGTCCTGGTTTTACAGAAGGTACAGAAGCTTTGCAAAAACAGAGAGGAAAAAGTCCGCGGATAAATCTTCGTGGATGCTGACTTCATTTCACAAGTTGGGGTTCAATGAATATGAGATTCTGGATTACTTGGATGAAGATAATGTTATTGGGAGCGGCGGATCTGGTAAGGTTTACAAGGCGACATTGAGCAATGGGGAGACTGTGGCCATTAAAAGGCTTTTCAGCAGTACTAAAGGCGATGCTTCTAATGATAATGGTTTCAAAGCAGAGGTGGACATACTGGG

Fln Alignment:

GD4IA4404ILBL9___SWFYRRYRSFAKTERKKSADKSSWMLTSFHKLGFNEYEILDYLDEDNVIGSGGSGKVYKATLSNGETVAIKRLFSSTKGDASNDNGFKAEVDIL
Q19AV8_______________AWFYRRYRNFANAERKKSVDKSSWMLTSFHRLRFSEYEILDCLDEDNVIVSDGASNVYKATLNNGELLAIKRLWSIYKTNASNDNGFQAEVDTL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain