SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79680

Length: 284 nt

UniGene Fasta

>sp_v3.0_unigene79680
TCTTCCATGGAACTGCACGGCACCATCTCTCCTTACCTCGGCAATTTGTCCTTTCTCCATTTCCTTGATCTTTCTAACAATTCCCTCCACGGTTATATCCCACGTCAACTGGGACGCCTTTTCCGTTTGAAGACGTTCTGGTTAGACTTCAATGAATTAGAGGGAAACATTCCGAGTGATCTGGGCAATTGCACAAATTTGGCTCACTGGAGGCTCAGCTACAACAATCTGACTGGAAGTATTTCGGAAGAGTTTGGCTCCCTCATACATCTGAAGGAACCTTA

Ace file of the UniGene sp_v3.0_unigene79680

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] emb\|CAB61955.1\| receptor kinase-like protein [Arabidopsis thaliana] gb\|AEE78242.1\| leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]	-	-	1.0e-17	53%
FL-Next	tr=Uncharacterized protein; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	0.0	53%
Sma3	Receptor kinase-like protein	-	-	1.44e-08	-

Source	Gene names
Sma3	AT3G47090; At3g47090; F13I12.140; GSVIVT00014285001; LOC_Os11g29790; LOC_Os11g36180; LOC_Os11g36200; LRR-RLK; Os11g0490200; Os11g0570000; OsI_03363; OsI_23501; OsI_28436; OsI_33040; OsI_33804; OsI_36147; OsI_36534; OsJ_21808; OsJ_33925; OsJ_34314; POPTRDR

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Fumarate lyase	IPR000362	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Domain of unknown function DUF1618	IPR011676	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G47090.1	Leucine-rich repeat protein kinase family protein chr3:17341512-17344645 REVERSE LENGTH=1009	3.0e-22	53%
RefSeq	Arabidopsis thaliana	NP_190293.1	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]	4.0e-22	53%
RefSeq	Populus trichocarpa	XP_002317696.1	predicted protein [Populus trichocarpa]	4.0e-22	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: I4DUG2

Fln msg: Distance to subject end: 569 aas, your sequence is shorter than subject: 94 - 743

Fln protein: SSMELHGTISPYLGNLSFLHFLDLSNNSLHGYIPRQLGRLFRLKTFWLDFNELEGNIPSDLGNCTNLAHWRLSYNNLTGSISEEFGSLIHLKEP

Protein Length: 95

Fln nts: TCTTCCATGGAACTGCACGGCACCATCTCTCCTTACCTCGGCAATTTGTCCTTTCTCCATTTCCTTGATCTTTCTAACAATTCCCTCCACGGTTATATCCCACGTCAACTGGGACGCCTTTTCCGTTTGAAGACGTTCTGGTTAGACTTCAATGAATTAGAGGGAAACATTCCGAGTGATCTGGGCAATTGCACAAATTTGGCTCACTGGAGGCTCAGCTACAACAATCTGACTGGAAGTATTTCGGAAGAGTTTGGCTCCCTCATACATCTGAAGGAACCTTA

Fln Alignment:

GD4IA4404IXPE1___SSMELHGTISPYLGNLSFLHFLDLSNNSLHGYIPRQLGRLFRLKTFWLDFNELEGNIPSDLGNCTNLAHWRLSYNNLTGSISEEFGSLIHLK
I4DUG2_______________SYMNLDGTISSILGNLSSLQSLDLSNNALTGTIPPQLGQLPHLRELWLHQNQLQGTIPPSLSACRSLYDLALSFNQLQGNIPPGLGSLTSLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain