SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79619

Length: 284 nt

UniGene Fasta

>sp_v3.0_unigene79619
AGAGATACAGGTGATAAATTATCAGTGTAACTTTATTTCGATACAATGATGAATATTTTATTATCAAATATGCACTTTAGGGGTATAATGGAATACAAAAATGCAGGCCACCCTCGCTCCTCCTGCAACAGGCAAGATGTTCAGAGGATTATGCATGTGCTACGGAGTAATTTCTGTGACATTTTACAGTGTGGCAGTGACAGGGTATTGGGCATTTGGTAACAATGCCAAGTCTAACGTATTGAAAAGTATCGTGCCAGATGAAGGCCCAACTCTCGCGCCCA

Ace file of the UniGene sp_v3.0_unigene79619

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	amino acid permease-like protein [Arabidopsis thaliana]	-	-	9.0e-21	69%
FL-Next	sp=Probable GABA transporter 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	69%
Sma3	Proline transporter	-	-	1.172e-11	-

Source	Gene names
Sma3	At5g41800; GSVIVT00002452001; GSVIVT00022097001; GSVIVT00034978001; OJ1007_H05.2; Os01g0621200; Os05g0586500; OsI_02902; OsI_21177; P0407B12.40; PHYPADRAFT_57709; POPTRDRAFT_180052; POPTRDRAFT_799999; POPTRDRAFT_832959; PtrProT3; PtrProT4; RCOM_0436840; R

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G41800.1	Transmembrane amino acid transporter family protein chr5:16733842-16735888 FORWARD LENGTH=452	1.0e-26	69%
RefSeq	Arabidopsis thaliana	NP_568597.1	Transmembrane amino acid transporter family protein [Arabidopsis thaliana]	1.0e-26	69%
RefSeq	Populus trichocarpa	XP_002303637.1	proline transporter [Populus trichocarpa]	7.0e-26	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8L4X4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 149 aas, your sequence is shorter than subject: 94 - 452

Fln protein: EIQVINYQCNFISIQ**IFYYQICTLGV*WNTKMQATLAPPATGKMFRGLCMCYGVISVTFYSVAVTGYWAFGNNAKSNVLKSIVPDEGPTLAP

Protein Length: 95

Fln nts: AGAGATACAGGTGATAAATTATCAGTGTAACTTTATTTCGATACAATGATGAATATTTTATTATCAAATATGCACTTTAGGGGTATAATGGAATACAAAAATGCAGGCCACCCTCGCTCCTCCTGCAACAGGCAAGATGTTCAGAGGATTATGCATGTGCTACGGAGTAATTTCTGTGACATTTTACAGTGTGGCAGTGACAGGGTATTGGGCATTTGGTAACAATGCCAAGTCTAACGTATTGAAAAGTATCGTGCCAGATGAAGGCCCAACTCTCGCGCCCA

Fln Alignment:

GD4IA4404IQ8M3___KMQATLAPPATGKMFRGLCMCYGVISVTFYSVAVTGYWAFGNNAKSNVLKSIVPDEGPTLAP
Q8L4X4_______________EIQATLAPPATGKMLKGLLLCYSVIFFTFYSAAISGYWVFGNNSSSNILKNLMPDEGPTLAP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain