SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79401

Length: 235 nt

UniGene Fasta

>sp_v3.0_unigene79401
GTAGTGTCCGGCAGCTTGAACTGGTCCCTGTGATAACTGCTACCCTTCCAGTTGATCGAAGCTGCCAATATCCAGAAGGGTCTTTCCCATACTTCAACGGCTTAGCTGATCGTGTCACGGTAATGAATGGAATAAATGCTCCAAAAGTGATTGAATGTGTTGGTTCTGATGGTCATAAGTATCGTCAGCTAGCCAAATCTGGAAACGATGACCTTGACAAGATGCGGTGATGGAA

Ace file of the UniGene sp_v3.0_unigene79401

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine-protein kinase ATM n=3 Tax=rosids RepID=ATM_ARATH	-	-	2.0e-28	83%
FL-Next	sp=Serine/threonine-protein kinase ATM; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	83%

Source	Gene names
Sma3	ATM; At3g48190; GSVIVT00016088001; OSTLU_51045; Os01g0106700; OsI_00057; OsJ_00056; PHYPADRAFT_85498; RCOM_1510550; T24C20.70;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chromosome	GO:0005694	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	meiosis	GO:0007126	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	PWWP	IPR000313	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	PIK-related kinase, FAT	IPR003151	-	-
Sma3	PIK-related kinase, FATC	IPR003152	-	-
Sma3	PIK-related kinase	IPR014009	-	-
Sma3	Ataxia-Telangiectasia Mutated	IPR015519	-	-
Sma3	Ribosomal protein S14, conserved site	IPR018271	-	-
Sma3	Phosphatidylinositol 3/4-kinase, conserved site	IPR018936	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G48190.1	ATM, ATATM ataxia-telangiectasia mutated chr3:17797628-17828361 FORWARD LENGTH=3845	4.0e-35	83%
RefSeq	Arabidopsis thaliana	NP_190402.6	serine/threonine-protein kinase [Arabidopsis thaliana]	5.0e-35	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M3G7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 313 aas, your sequence is shorter than subject: 76 - 3856

Fln protein: SVRQLELVPVITATLPVDRSCQYPEGSFPYFNGLADRVTVMNGINAPKVIECVGSDGHKYRQLAKSGNDDLDKMR*

Protein Length: 77

Fln nts: GTAGTGTCCGGCAGCTTGAACTGGTCCCTGTGATAACTGCTACCCTTCCAGTTGATCGAAGCTGCCAATATCCAGAAGGGTCTTTCCCATACTTCAACGGCTTAGCTGATCGTGTCACGGTAATGAATGGAATAAATGCTCCAAAAGTGATTGAATGTGTTGGTTCTGATGGTCATAAGTATCGTCAGCTAGCCAAATCTGGAAACGATGACCTTGACAAGATGCGGTGATGGAA

Fln Alignment:

GD4IA4404JV5SN___SVRQLELVPVITATLPVDRSCQYPEGSFPYFNGLADRVTVMNGINAPKVIECVGSDGHKYRQLAKSGNDDL
Q9M3G7_______________SVKQLELVPVVTATIPVDRSCQYNEGSFPFFRGLSDSVTVMNGINAPKVVECFGSDGQKYKQLAKSGNDDL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain