SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79323

Length: 390 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene79323
AGGATGATTGGAACTCCTGATTATATGGNTCCAGAAATTATCAAAGGCATGGACTGCAACGCTAGAAGTGTTGATTGGTGGAGTATGGGAGTTATTTTATATGAATTGCTTGTGGGGATTCCATGCTTCAATGACGAATCAGTCGATAAAATTTATGATAACATTCTCAACCAAAGAATTGAGTGGCCCAAGATCGGCCATGATGAAGATTGTATGTCACCTGAAGCTGAGGATCTTATCAAGAAACTCCTAAATCCTACTCCACAAATGCGATTAGGATCTCAGAGAGGGGCAAGTGATATAAAAGGGCATCCCTTCTTTAAAAATTTTGATTGGGAGAGTGTTAGAGAGACAAAGGCTCCCGTGATTCCTTGTGAAGCAGATGAAAGA

Ace file of the UniGene sp_v3.0_unigene79323 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein kinase domain containing protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CAF0D	-	-	4.00001e-40	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%

Source	ECs	Term	Type	e value	Identity
Sma3	Protein kinase C.	EC:2.7.11.13	-	2.464e-06	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Phosphatidylinositol signaling system	04070		2.464e-06	%

Source	Gene names
Sma3	AT1G48490; At3g17850/MEB5_7; At5g62310; CHLREDRAFT_115025; GSVIVT00008775001; GSVIVT00017880001; IRE; IREH1; LOC_Os03g50390; LOC_Os12g42660; OSJNBb0033N16.3; Os03g0711800; Os12g0621500; OsI_13249; OsI_39164; OsJ_12320; OsJ_36911; PHYPADRAFT_148894; PHYPAD

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	AGC-kinase, C-terminal	IPR000961	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G48490.1	Protein kinase superfamily protein chr1:17922345-17928597 REVERSE LENGTH=1235	2.0e-34	50%
RefSeq	Arabidopsis thaliana	NP_001154409.1	protein kinase domain-containing protein [Arabidopsis thaliana]	2.0e-34	50%
RefSeq	Populus trichocarpa	XP_002321526.1	predicted protein [Populus trichocarpa]	1.0e-33	49%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVL2

Fln msg: Distance to subject end: 34 aas, your sequence is shorter than subject: 130 - 506

Fln protein: RMIGTPDYMVPEIIKGMDCNARSVDWWSMGVILYELLVGIPCFNDESVDKIYDNILNQRIEWPKIGHDEDCMSPEAEDLIKKLLNPTPQMRLGSQRGASDIKGHPFFKNFDWESVRETKAPVIPCEADER

Protein Length: 131

Fln nts: AGGATGATTGGAACTCCTGATTATATGGtTCCAGAAATTATCAAAGGCATGGACTGCAACGCTAGAAGTGTTGATTGGTGGAGTATGGGAGTTATTTTATATGAATTGCTTGTGGGGATTCCATGCTTCAATGACGAATCAGTCGATAAAATTTATGATAACATTCTCAACCAAAGAATTGAGTGGCCCAAGATCGGCCATGATGAAGATTGTATGTCACCTGAAGCTGAGGATCTTATCAAGAAACTCCTAAATCCTACTCCACAAATGCGATTAGGATCTCAGAGAGGGGCAAGTGATATAAAAGGGCATCCCTTCTTTAAAAATTTTGATTGGGAGAGTGTTAGAGAGACAAAGGCTCCCGTGATTCCTTGTGAAGCAGATGAAAGA

Fln Alignment:

GD4IA4404JK7T8___IGTPDYMVPEIIKGMDCNARSVDWWSMGVILYELLVGIPCFNDESVDKIYDNILNQRIEWPKIGHDEDCMSPEAEDLIKKLLNPTPQMRLGSQRGASDIKGHPFFKNFDWESVRETKAPVIP
A9NVL2_______________VGTHEYLAPEIIKG-EGHGSAVDWWTFGIFLYELLHGKTPFKGAGNHATLSNVAGQPLKFP----EAPAISSGARNLIKGLLAKGPQHRLGSRRGATEIKQHPFFEGVNWALIRSITPPEVP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain