SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78881

Length: 193 nt

UniGene Fasta

>sp_v3.0_unigene78881
ACGACGTGTTCTCCAGATCCTCCAGGGATAGAGATGAGATGGACGACGAGGAGGCCTTGAAGTGGGCGGCCTTAGAGAAATTGCCCACTTACGACCGAATCCGCAAGGCGATTCTCCACAGCGTTGCAGGTGAGCATGAGGAAGTCGATGTTGCCAAGATCGGCTTTCAAGACCGTCGCCTCTTGATTGACAG

Ace file of the UniGene sp_v3.0_unigene78881

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pleiotropic drug resistance protein TUR2 n=1 Tax=Spirodela polyrhiza RepID=TUR2_SPIPO	-	-	1.0e-08	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Sma3	ATP-binding cassette transporter, putative	-	-	7.033e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	1.541e-10	-

Source	Gene names
Sma3	ABC1; B1045F02.15; GSVIVT00034492001; GSVIVT00034494001; GSVIVT00034502001; GSVIVT00034510001; GSVIVT00034512001; GSVIVT00034517001; GSVIVT00034521001; GSVIVT00034523001; LOC_Os01g42410; LOC_Os02g11760; OJ1003_F05.29-1; OJ1006_A02.12-1; OSJNBa0017I18.21-1

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002298123.1	pleiotropic drug resistance, ABC transporter family protein, partial [Populus trichocarpa]	3.0e-12	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LN70

Fln msg: Distance to subject end: 355 aas, your sequence is shorter than subject: 63 - 443

Fln protein: DVFSRSSRDRDEMDDEEALKWAALEKLPTYDRIRKAILHSVAGEHEEVDVAKIGFQDRRLLID

Protein Length: 64

Fln nts: ACGACGTGTTCTCCAGATCCTCCAGGGATAGAGATGAGATGGACGACGAGGAGGCCTTGAAGTGGGCGGCCTTAGAGAAATTGCCCACTTACGACCGAATCCGCAAGGCGATTCTCCACAGCGTTGCAGGTGAGCATGAGGAAGTCGATGTTGCCAAGATCGGCTTTCAAGACCGTCGCCTCTTGATTGACAG

Fln Alignment:

GD4IA4404ILRWM___ALKWAALEKLPTYDRIRKAILHS------VAGEHEEVDVAKIGFQDRRLLID
B8LN70_______________ALAWAAIERLPTYERLRTSILNDLVNNQPIGSPHNQIDVTNIPPEARKQLID

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain