SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78778

Length: 248 nt

UniGene Fasta

>sp_v3.0_unigene78778
CCGTCCTCATCCACAACGGTGAGCCTGTCTGCGAATCTCTCATCATTCTCCAATACATAGACGAGGTTTGGCCGGGCACCAATTCCTTCATGCCGTCAAACCCATATGACCGAGCCATTGCAAGGTTCTGGGCAGACTTTCTAGACACTAAGGAGAAGGTCAAGAAGAAGGCAAGCGTTATATGTTGGAATACCTTGGATTGCTAGAAGGGGTACTGAAGGAATTTTCTGCAGGCGGAAGTAAGCCTT

Ace file of the UniGene sp_v3.0_unigene78778

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tau class glutathione S-transferase n=2 Tax=Pinus RepID=D3YLT8_9CONI	-	-	1.0e-21	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Glutathione S-transferase	-	-	1.898e-34	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glutathione transferase.	EC:2.5.1.18	-	6.12e-27	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glutathione metabolism	00480		6.12e-27	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980		6.12e-27	%
Sma3	Drug metabolism - cytochrome P450	00982		6.12e-27	%
Sma3	Lactoylglutathione lyase.	EC:4.4.1.5	-	1.686e-13	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pyruvate metabolism	00620		1.686e-13	%

Source	Gene names
Sma3	At1g17170; At1g17180; At1g17180/F20D23_12; At1g17190; At1g78320; At1g78340; At1g78340/F3F9_13; At1g78360; At1g78370; At1g78380; BI-GST/GPX; C-7; EgHypar; F20D23.11; F20D23.12; F20D23.13; GST; GST1; GST1a; GST1b; GST2; GST5; GSTU1; GSTU2; GSTU6; GSTa; GSVI

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	glutathione transferase activity	GO:0004364	Molecular Function	-
Sma3	lactoylglutathione lyase activity	GO:0004462	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	glutathione binding	GO:0043295	Molecular Function	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	toxin catabolic process	GO:0009407	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to herbicide	GO:0009635	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	cellular response to water deprivation	GO:0042631	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G78320.1	ATGSTU23, GSTU23 glutathione S-transferase TAU 23 chr1:29467581-29468358 REVERSE LENGTH=220	7.0e-21	63%
RefSeq	Arabidopsis thaliana	NP_177955.1	glutathione S-transferase TAU 23 [Arabidopsis thaliana]	9.0e-21	63%
RefSeq	Populus trichocarpa	XP_002317608.1	predicted protein [Populus trichocarpa]	2.0e-19	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NSK9

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 79 aas, your sequence is shorter than subject: 82 - 229

Fln protein: VLIHNGEPVCESLIILQYIDEVWPGTNSFMPSNPYDRAIAxxxxxxxxxxxEGQEEGKRYMLEYLGLLEGVLKEFSAGGSKP

Protein Length: 83

Fln nts: CCGTCCTCATCCACAACGGTGAGCCTGTCTGCGAATCTCTCATCATTCTCCAATACATAGACGAGGTTTGGCCGGGCACCAATTCCTTCATGCCGTCAAACCCATATGACCGAGCCATTGCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAAGGTCAAGAAGAAGGCAAGCGTTATATGTTGGAATACCTTGGATTGCTAGAAGGGGTACTGAAGGAATTTTCTGCAGGCGGAAGTAAGCCTT

Fln Alignment:

GD4IA4403FOJ9L___VLIHNGEPVCESLIILQYIDEVWPGTNSFMPSNPYDRAIARFWADFLDTKxxxxVLGRLSRH*GEGQEEGKRYMLEYLGLLEGVLKEFSAGGSKP
A9NSK9_______________VLIHNGKPICESLIILQYMDEVWPGSNSLLPSNPYDRALARFWADFLDTKxxxxVVDKIFKCTGEGQEEGTRYMLEYLGLLE---RELSAGEGKP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain