SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78717

Length: 162 nt

UniGene Fasta

>sp_v3.0_unigene78717
AAGGTCAGAGGAGATTCTTGAGCGTGGTCTCAAAGTGAAGGAGTATGAACTCCGTCGGAAGAACTTTTCGGAGACTGGAAACTTCGGTTTCGGTATCCAGGAGCATATCGATCTTGGAGCGAGATATGATCCTGGTATCGGTATCTTTGGAATGGACTTTTA

Ace file of the UniGene sp_v3.0_unigene78717

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L11 n=4 Tax=Agaricomycetes RepID=B8P5N8_POSPM	-	-	2.0e-22	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Ribosomal protein L11	-	-	2.963e-11	-

Source	Gene names
Sma3	At2g42740; At3g58700; At4g18730; At5g45775; CHLREDRAFT_195587; F28A21.140; GSVIVT00018776001; GSVIVT00035844001; L16; MICPUCDRAFT_24004; MICPUN_89807; MRA19.26; MRA19_21; OSTLU_30777; Os01g0205500; Os02g0235600; Os06g0550000; OsI_00826; OsI_06487; OsI_188

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L5	IPR002132	-	0.0	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G45775.2	Ribosomal L5P family protein chr5:18565281-18566496 REVERSE LENGTH=182	2.0e-22	71%
RefSeq	Arabidopsis thaliana	NP_851137.1	60S ribosomal protein L11-2 [Arabidopsis thaliana]	2.0e-22	71%
RefSeq	Populus trichocarpa	XP_002309361.1	predicted protein [Populus trichocarpa]	2.0e-22	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACF6

Fln msg: Distance to subject end: 50 aas, your sequence is shorter than subject: 53 - 180

Fln protein: RSEEILERGLKVKEYELRRKNFSETGNFGFGIQEHIDLGARYDPGIGIFGMDF

Protein Length: 54

Fln nts: AAGGTCAGAGGAGATTCTTGAGCGTGGTCTCAAAGTGAAGGAGTATGAACTCCGTCGGAAGAACTTTTCGGAGACTGGAAACTTCGGTTTCGGTATCCAGGAGCATATCGATCTTGGAGCGAGATATGATCCTGGTATCGGTATCTTTGGAATGGACTTTTA

Fln Alignment:

GD4IA4403F49MF___EILERGLKVKEYELRRKNFSETGNFGFGIQEHIDLGARYDPGIGIFGMDF
D5ACF6_______________QLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain