SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78615

Length: 238 nt

UniGene Fasta

>sp_v3.0_unigene78615
CGTATGGACTGTTTTACGTTTCTGTGAGTCAAACACAACATGTTTGCTTAAGGTTCTTGAATTTCTTCCCGAACTCTTTGAGGCTCTAAAGAATGAGGGGTATACTATAACTGAATGCGAAGCTTGCATCTTTCTTCCTTGCTTAATTGAGAAGTTAGGGCACAATATTGAGAAGGTACGGGAAAAGATACGTGAATTAGCAAAACTTACAACATGCATATATCCTACATCAAAGCTC

Ace file of the UniGene sp_v3.0_unigene78615

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Microtubule bundling polypeptide TMBP200 n=1 Tax=Nicotiana tabacum RepID=Q8S912_TOBAC	-	-	5.0e-26	74%
FL-Next	sp=Protein MOR1; Oryza sativa subsp. japonica (Rice).	-	-	0.0	70%
Sma3	Microtubule organization protein	-	-	1.019e-09	-

Source	Gene names
Sma3	At2g35630; B1148D12.6-1; GSVIVT00008514001; GSVIVT00010191001; MOR1; MOR2; MtrDRAFT_AC183502g26v2; OSJNBa0085D07.49-1; Os01g0816400; OsI_04204; OsJ_03864; PHYPADRAFT_106216; POPTRDRAFT_550419; POPTRDRAFT_727336; RCOM_0214170;

Source	GOs	Term	Type	Identity
Sma3	spindle	GO:0005819	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	phragmoplast	GO:0009524	Cellular Component	-
Sma3	preprophase band	GO:0009574	Cellular Component	-
Sma3	cortical microtubule cytoskeleton	GO:0030981	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	microtubule binding	GO:0008017	Molecular Function	-
Sma3	cell plate formation involved in plant-type cell wall biogenesis	GO:0009920	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	VHS	IPR002014	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G35630.1	MOR1, GEM1 ARM repeat superfamily protein chr2:14966828-14980361 FORWARD LENGTH=1978	2.0e-29	70%
RefSeq	Arabidopsis thaliana	NP_565811.2	microtubule organization 1 protein [Arabidopsis thaliana]	2.0e-29	70%
RefSeq	Populus trichocarpa	XP_002317062.1	microtubule organization protein [Populus trichocarpa]	1.0e-30	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5N749

Fln msg: Distance to subject end: 697 aas, your sequence is shorter than subject: 79 - 1997

Fln protein: VWTVLRFCESNTTCLLKVLEFLPELFEALKNEGYTITECEACIFLPCLIEKLGHNIEKVREKIRELAKLTTCIYPTSKL

Protein Length: 80

Fln nts: CGTATGGACTGTTTTACGTTTCTGTGAGTCAAACACAACATGTTTGCTTAAGGTTCTTGAATTTCTTCCCGAACTCTTTGAGGCTCTAAAGAATGAGGGGTATACTATAACTGAATGCGAAGCTTGCATCTTTCTTCCTTGCTTAATTGAGAAGTTAGGGCACAATATTGAGAAGGTACGGGAAAAGATACGTGAATTAGCAAAACTTACAACATGCATATATCCTACATCAAAGCTC

Fln Alignment:

GD4IA4403GB354___WTVLRFCESNTTCLLKVLEFLPELFEALKNEGYTITECEACIFLPCLIEKLGHNIEKVREKIRELAKLTTCIYPTSKL
Q5N749_______________WFVLRFCESNTTCLLKVLDFLPELFDVLKDQSYMLTEAEAAIFLPCLMEKSGHNIEKVREKMGELIKQMVNIYSLPKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain