SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78218

Length: 172 nt

UniGene Fasta

>sp_v3.0_unigene78218
GGCGACATCACGCAAGAATATGATCAACACTTGGGTCCGGTGAACACTATCACTTTTGTGGACGAGAATAGGAGGTTCGTAACGACTTCTGATGACAAGACCATTCGCGCCTGGGATTTCGACATCCCTGTCACGATTAAATACATCGCCGAGCCATACATGCACTCTATGC

Ace file of the UniGene sp_v3.0_unigene78218

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pre-mRNA splicing factor n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8N165_COPC7	-	-	3.0e-25	94%
FL-Next	tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya).	-	-	0.0	78%

Source	Gene names
Sma3	GSVIVT00028826001; LOC_Os03g27970; MICPUCDRAFT_50511; MICPUN_59865; OSTLU_17027; Os03g0397500; Os03g27970; OsI_11920; OsJ_11159; Ot10g01140; PHYPADRAFT_99420; POPTRDRAFT_565006; POPTRDRAFT_880825; RCOM_0528950; THAPSDRAFT_13794;

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Pyrrolo-quinoline quinone beta-propeller repeat	IPR018391	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G10580.1	Transducin/WD40 repeat-like superfamily protein chr1:3491560-3493665 REVERSE LENGTH=573	1.0e-26	77%
RefSeq	Arabidopsis thaliana	NP_172528.2	pre-mRNA-processing factor 17 [Arabidopsis thaliana]	1.0e-26	77%
RefSeq	Populus trichocarpa	XP_002315592.1	predicted protein [Populus trichocarpa]	2.0e-26	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1H4S1

Fln msg: Distance to subject end: 114 aas, your sequence is shorter than subject: 57 - 437

Fln protein: GDITQEYDQHLGPVNTITFVDENRRFVTTSDDKTIRAWDFDIPVTIKYIAEPYMHSM

Protein Length: 58

Fln nts: GGCGACATCACGCAAGAATATGATCAACACTTGGGTCCGGTGAACACTATCACTTTTGTGGACGAGAATAGGAGGTTCGTAACGACTTCTGATGACAAGACCATTCGCGCCTGGGATTTCGACATCCCTGTCACGATTAAATACATCGCCGAGCCATACATGCACTCTATGC

Fln Alignment:

GD4IA4403F924Q___GDITQEYDQHLGPVNTITFVDENRRFVTTSDDKTIRAWDFDIPVTIKYIAEPYMHSM
I1H4S1_______________GQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain