SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77628

Length: 360 nt

UniGene Fasta

>sp_v3.0_unigene77628
CGAACGAATCCGAACGAATCGCTCGCTGACCACCGACCGATCCTTCCTCGGAACATACTAACAAGCTACAGTCATGGCCCCTGCCGCAGCTCAAGGAGGAAAGAAGCAGAAGAAGAAGTGGTCTAAGGGAAAGGTCAAGGACAAGGCCCAGCATGCCGTCATCATGGACAAGACCATCCAGGAGCGTCTTAACAAGGATGTCCTGACCTACCGCCTCATTACCACTGCCGTCCTCGTCGACAGACTGAAGATCAACGGCTCTCTCGCACGCCAGGCTCTTGCCGACCTCGAGGGACAGGGTGTCATCAAGAAGGTTGTCGGTCACTCCAAGCTCTCCATCTACACGAGAGCTGTTGCCGC

Ace file of the UniGene sp_v3.0_unigene77628

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S25 n=1 Tax=Aspergillus oryzae RIB40 RepID=UPI0001F29D70	-	-	2.0e-22	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Sma3	40S ribosomal protein S25	-	-	3.534e-09	-

Source	Gene names
Sma3	GSVIVT00007016001; Os08g0559200; Os11g0153800; OsJ_28274; P0562A06.14; RPS25;

Source	GOs	Term	Type	e value	Identity
Sma3	ribosome	GO:0005840	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S25	IPR004977	-	0.0	-
Sma3	NMD3	IPR007064	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002311010.1	predicted protein [Populus trichocarpa]	9.0e-13	46%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT78

Fln msg: STOP codon was not found. Distance to subject end: 0 aas, Unexpected STOP codon in 5 prime region,

Fln protein: MAPAAAQGGKKQKKKWSKGKVKDKAQHAVIMDKTIQERLNKDVLTYRLITTAVLVDRLKINGSLARQALADLEGQGVIKKVVGHSKLSIYTRAVA

Protein Length: 96

Fln nts: CGAACGAATCCGAACGAATCGCTCGCTGACCACCGACCGATCCTTCCTCGGAACATACTAACAAGCTACAGTC_-_ATGGCCCCTGCCGCAGCTCAAGGAGGAAAGAAGCAGAAGAAGAAGTGGTCTAAGGGAAAGGTCAAGGACAAGGCCCAGCATGCCGTCATCATGGACAAGACCATCCAGGAGCGTCTTAACAAGGATGTCCTGACCTACCGCCTCATTACCACTGCCGTCCTCGTCGACAGACTGAAGATCAACGGCTCTCTCGCACGCCAGGCTCTTGCCGACCTCGAGGGACAGGGTGTCATCAAGAAGGTTGTCGGTCACTCCAAGCTCTCCATCTACACGAGAGCTGTTGCCGC

Fln Alignment:

GD4IA4403HLCNS___VIMDKTIQERLNKDVLTYRLITTAVLVDRLKINGSLARQALADLEGQGVIKKVVGHSKLSIYTRA
A9NT78_______________VLFDQATYDKLISEAPKYKLITPSILSDRLRINGSLARKAIKDLMAKGLIRMISAHSSQQIYTRA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain