SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77414

Length: 365 nt

UniGene Fasta

>sp_v3.0_unigene77414
AGCGGTAAAGAGGAGATATCTCCATATTATCTTGAAAGCCCAGAGATTGACCAGAGTCAGCATGAAAAATTAGACAAGCTGGCTGATGACACTGCTGATTACATACATTCAGATTTAACACCAAAATGGACTGATTTGGATGTAAACAGGCATGTCAACAACGTTAAGTACATTGGTTGGATTATGGAGAGTGTGCCAGTCTCTATTTTGGAGAATCAACAGCTAGTAAAGATGACTTTGGAGTACAGAAGAGAATGTGAGCAATTCCATGTCCTTCAGTCACTTACAAGCCTAGAGAAGAACCGTGGTGATTCTATAGATCCAAATTGCTCTCCGAGCTATTCATGTGCAAGTGTCCGTTCTTC

Ace file of the UniGene sp_v3.0_unigene77414

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acyl-ACP thioesterase n=2 Tax=Iris RepID=Q9FQX8_9ASPA	-	-	1.0e-29	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Sma3	Acyl-ACP thioesterase	-	-	2.033e-38	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on ester bonds, Thiolester hydrolases.	EC:3.1.2.-	-	9.731e-15	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fatty acid biosynthesis	00061		9.731e-15	%
Sma3	Benzoate degradation	00362		9.731e-15	%
Sma3	alpha-Linolenic acid metabolism	00592		9.731e-15	%
Sma3	Limonene and pinene degradation	00903		9.731e-15	%
Sma3	Biosynthesis of unsaturated fatty acids	01040		9.731e-15	%
Sma3	Biosynthesis of plant hormones	01070		9.731e-15	%
Sma3	Metabolic pathways	01100		9.731e-15	%
Sma3	Oleoyl-[acyl-carrier-protein] hydrolase.	EC:3.1.2.14	-	1.193e-15	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fatty acid biosynthesis	00061		1.193e-15	%
Sma3	Metabolic pathways	01100		1.193e-15	%

Source	Gene names
Sma3	57h21.27; At1g08510; At1g08510/T27G7.19; FAT1; FATB; FATB1; FATB1a; FATB1b; FATB2; FatB; FatB1; FatB2; GSVIVT00016807001; GSVIVT00017969001; LOC_Os11g43820; Mf-FatB1; Mf-FatB2; Os06g0143400; Os11g0659500; OsI_08258; OsI_08261; OsI_21596; OsI_23580; OsJ_07

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	acyl carrier activity	GO:0000036	Molecular Function	-
Sma3	oleoyl-[acyl-carrier-protein] hydrolase activity	GO:0004320	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Acyl-ACP thioesterase	IPR002864	-	0.0	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G08510.1	FATB fatty acyl-ACP thioesterases B chr1:2691546-2693409 REVERSE LENGTH=412	6.0e-34	60%
RefSeq	Arabidopsis thaliana	NP_172327.1	fatty acyl-ACP thioesterases B [Arabidopsis thaliana]	7.0e-34	60%
RefSeq	Populus trichocarpa	XP_002322277.1	predicted protein [Populus trichocarpa]	2.0e-32	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LS31

Fln msg: Distance to subject end: 47 aas, your sequence is shorter than subject: 121 - 386

Fln protein: SGKEEISPYYLESPEIDQSQHEKLDKLADDTADYIHSDLTPKWTDLDVNRHVNNVKYIGWIMESVPVSILENQQLVKMTLEYRRECEQFHVLQSLTSLEKNRGDSIDPNCSPSYSCASVRS

Protein Length: 122

Fln nts: AGCGGTAAAGAGGAGATATCTCCATATTATCTTGAAAGCCCAGAGATTGACCAGAGTCAGCATGAAAAATTAGACAAGCTGGCTGATGACACTGCTGATTACATACATTCAGATTTAACACCAAAATGGACTGATTTGGATGTAAACAGGCATGTCAACAACGTTAAGTACATTGGTTGGATTATGGAGAGTGTGCCAGTCTCTATTTTGGAGAATCAACAGCTAGTAAAGATGACTTTGGAGTACAGAAGAGAATGTGAGCAATTCCATGTCCTTCAGTCACTTACAAGCCTAGAGAAGAACCGTGGTGATTCTATAGATCCAAATTGCTCTCCGAGCTATTCATGTGCAAGTGTCCGTTCTTC

Fln Alignment:

GD4IA4403F9HLT___LESPEIDQSQHEKLDKLADDTADYIHSDLTPKWTDLDVNRHVNNVKYIGWIMESVPVSILENQQLVKMTLEYRRECEQFHVLQSLTSLEKNRGDS
B8LS31_______________LAFPEENNNSSKKIPKL-EDPAQHSRSGLMPRRADLDMNQHVNNVTYIGWVLESMPQEVLDTHELEMITLDYRRECNKDDIVESLTSLLSEKSDS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain