SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene77158

Length: 255 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene77158
TCACCTATGCTGCCTGCGTAGAAAAGTTNAGGGACCTGATGGAGAACCATGGGATCCAAGTGATCACCATCGATACCCCTCCCGAGGGCTGCGACAGCATCTCGCTTTTGTTGGATGGAAAAACGCGAGAGCGAGTACTGCTCTAGCGACATGGTCGTCCAGCAAGACGACACGGTTGCACTGCTTTATTCGTCGGGCACGACGGGGCTCCCCAAGGGTGTCATGTTGACACACAAGGGGATCGTCTCCAACCTC

Ace file of the UniGene sp_v3.0_unigene77158 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	4-coumarate--CoA ligase n=18 Tax=Pinaceae RepID=4CL_PINTA	-	-	4.0e-11	75%
FL-Next	tr=4-coumarate-CoA ligase; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	53%

Source	ECs	Term	Type	e value	Identity
Sma3	4-coumarate--CoA ligase.	EC:6.2.1.12	-	4.025e-06	-

Source	KEGGs	Term	e value	Identity
Sma3	Ubiquinone and other terpenoid-quinone biosynthesis	00130	4.025e-06	%
Sma3	Phenylalanine metabolism	00360	4.025e-06	%
Sma3	Phenylpropanoid biosynthesis	00940	4.025e-06	%
Sma3	Biosynthesis of phenylpropanoids	01061	4.025e-06	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	4.025e-06	%
Sma3	Metabolic pathways	01100	4.025e-06	%
Sma3	Biosynthesis of secondary metabolites	01110	4.025e-06	%

Source	Gene names
Sma3	4CL; 4CL1; POPTRDRAFT_639764; Ptr4CL3;

Source	GOs	Term	Type	Identity
Sma3	4-coumarate-CoA ligase activity	GO:0016207	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	phenylpropanoid metabolic process	GO:0009698	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G51680.1	4CL1, 4CL.1, AT4CL1 4-coumarate:CoA ligase 1 chr1:19159007-19161464 REVERSE LENGTH=561	8.0e-11	45%
RefSeq	Arabidopsis thaliana	NP_849793.1	4-coumarate--CoA ligase 1 [Arabidopsis thaliana]	9.0e-11	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8QN50

Fln msg: Separated hits, possible frame ERROR between 116 and 151, Distance to subject end: 327 aas, your sequence is shorter than subject: 85 - 537

Fln protein: TYAACVEKFRDLMENHGIQVITIDTPPEGCDSISLLLxxxxxxxxxxxxxMVVQQDDTVALLYSSGTTGLPKGVMLTHKGIVSNL

Protein Length: 86

Fln nts: TCACCTATGCTGCCTGCGTAGAAAAGTTtAGGGACCTGATGGAGAACCATGGGATCCAAGTGATCACCATCGATACCCCTCCCGAGGGCTGCGACAGCATCTCGCTTTTGTTGGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCATGGTCGTCCAGCAAGACGACACGGTTGCACTGCTTTATTCGTCGGGCACGACGGGGCTCCCCAAGGGTGTCATGTTGACACACAAGGGGATCGTCTCCAACCTC

Fln Alignment:

GD4IA4402DAU1D___TYAACVEKFRDLMENHGIQVITID-TPPEGCDSISLLLDxxxxxxxxxxxxMVVQQDDTVALLYSSGTTGLPKGVMLTHKGIVSNL
B8QN50_______________TLAAYVEKLADL-QSHDVLVITIDDAPKEGCQHISVLTExxxxxxxxxxxxVTIHPDDVVALPYSSGTTGLPKGVMLTHKGLVSSV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain