SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76934

Length: 228 nt

UniGene Fasta

>sp_v3.0_unigene76934
GATTCGTGAAAAACTGAAGGTCATTCCACCAAACAGAAAATGGAATGATAAACACGATCTTGTTTTTCGAGCACTACAAAGTGACTTCATGAAGAGTGTAGTGGATCAGGTTGATGAGCTGCTATCTCGAGGTGAAAATGTTACAATTTACAACGGCCAGGTGGATTTGATCTGCGCAACCATAGGAACAGAAGCCTGGGTTCAAAAATTGAAATGGCTGGGTTTGAG

Ace file of the UniGene sp_v3.0_unigene76934

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative serine carboxypeptidase [Oryza sativa Japonica Group]	-	-	6.0e-20	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Retinoid-inducible serine carboxypeptidase, putative	-	-	8.406e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Carboxypeptidase D.	EC:3.4.16.6	-	6.877e-10	-

Source	Gene names
Sma3	At2g27920; GSVIVT00022132001; LOC_Os03g27480; LOC_Os03g27590; OSJNBa0065F09.14; OSJNBa0093I13.3; Os03g0392600; Os08g0560500; OsI_11889; OsI_11895; OsI_30277; OsJ_11128; OsJ_11135; OsJ_28285; P0562A06.41; P0604E01.18; PHYPADRAFT_147350; POPTRDRAFT_1088913;

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	serine-type carboxypeptidase activity	GO:0004185	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G27920.1	SCPL51 serine carboxypeptidase-like 51 chr2:11885777-11889043 REVERSE LENGTH=461	2.0e-24	57%
RefSeq	Arabidopsis thaliana	NP_973551.1	serine carboxypeptidase-like 51 [Arabidopsis thaliana]	1.0e-24	57%
RefSeq	Populus trichocarpa	XP_002326224.1	predicted protein [Populus trichocarpa]	3.0e-27	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NY00

Fln msg: Distance to subject end: 62 aas, your sequence is shorter than subject: 75 - 172

Fln protein: IREKLKVIPPNRKWNDKHDLVFRALQSDFMKSVVDQVDELLSRGENVTIYNGQVDLICATIGTEAWVQKLKWLGL

Protein Length: 76

Fln nts: GATTCGTGAAAAACTGAAGGTCATTCCACCAAACAGAAAATGGAATGATAAACACGATCTTGTTTTTCGAGCACTACAAAGTGACTTCATGAAGAGTGTAGTGGATCAGGTTGATGAGCTGCTATCTCGAGGTGAAAATGTTACAATTTACAACGGCCAGGTGGATTTGATCTGCGCAACCATAGGAACAGAAGCCTGGGTTCAAAAATTGAAATGGCTGGGTTTGAG

Fln Alignment:

GD4IA4402D9ME3___IREKLKVIPPNRKWNDKHDLVFRALQSDFMKSVVDQVDELLSRGENVTIYNGQVDLICATIGTEAWVQKLKWLGL
A9NY00_______________IREKLKVIPSKKIWNDQSNLVFLELESDFMKSAVDQVDELLSRGESVTIYNGQVDLICATIGTEAWVQKLKWQGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain