SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76859

Length: 156 nt

UniGene Fasta

>sp_v3.0_unigene76859
ACCAATATGCCTTGGGTACTTGATGTTGGTATTAGAAGAAGATTTGAAAAAAGAATTTATATTGGATTACCTGATTCTGTTGCTAGAACCAAGATGTTTGAAATTCGTTTAGGGAACACACCTCATAGCCTTACTAGTCAAGATTTCAGAGATCTA

Ace file of the UniGene sp_v3.0_unigene76859

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Vacuolar protein sorting factor 4B n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9CD06_9EUKA	-	-	6.0e-14	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Suppressor of K+ transport growth defect-like protein	-	-	5.596e-09	-

Source	Gene names
Sma3	B1103G11.33; GSVIVT00001616001; GSVIVT00011401001; Os02g0159900; OsI_05936; OsJ_00317; OsJ_05463; P0019D06.2; POPTRDRAFT_767184; POPTRDRAFT_803125; POPTRDRAFT_822715; RCOM_1279970; SDK1; SKD1; VITISV_001131; VITISV_019342;

Source	GOs	Term	Type	e value	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	0.0	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	MIT	IPR007330	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G27600.1	SKD1, VPS4, ATSKD1 AAA-type ATPase family protein chr2:11781226-11783730 FORWARD LENGTH=435	6.0e-15	59%
RefSeq	Arabidopsis thaliana	NP_180328.1	vacuolar protein-sorting-associated protein 4 [Arabidopsis thaliana]	8.0e-15	59%
RefSeq	Populus trichocarpa	XP_002313671.1	predicted protein [Populus trichocarpa]	2.0e-15	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P2N1

Fln msg: Distance to subject end: 111 aas, your sequence is shorter than subject: 52 - 439

Fln protein: TNMPWVLDVGIRRRFEKRIYIGLPDSVARTKMFEIRLGNTPHSLTSQDFRDL

Protein Length: 53

Fln nts: ACCAATATGCCTTGGGTACTTGATGTTGGTATTAGAAGAAGATTTGAAAAAAGAATTTATATTGGATTACCTGATTCTGTTGCTAGAACCAAGATGTTTGAAATTCGTTTAGGGAACACACCTCATAGCCTTACTAGTCAAGATTTCAGAGATCTA

Fln Alignment:

GD4IA4402E0FHV___TNMPWVLDVGIRRRFEKRIYIGLPDSVARTKMFEIRLGNTPHSLTSQDFRDL
A9P2N1_______________TNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPNNLTEGDFEDL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain