SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76396

Length: 290 nt

UniGene Fasta

>sp_v3.0_unigene76396
AGATACTCAAAAACGATTCAAGCACTGGCAGATAAATTTCCACAAGAGAATGTTCTTGTTACTCATGGTGAAGGTGTTGGAGTTTCAGTTTCTACATTTAAAAAGGATGTAATTGTTCACGCAGTAGAATATTGTGCGTATTCTCACTCTCAGAGATCCATCTTTGGCCCTTCAACAAATGGGCTGAATACTGAAAAGTTTCACGTTTTGACAGAATCAGGTCAATCAGGTATTCGATTTATAACAAGTAAAAAATTCATGGAGTAATTGTACAAGTGCTATTGTTGTGC

Ace file of the UniGene sp_v3.0_unigene76396

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phosphoglycerate mutase-like protein [Arabidopsis thaliana] emb\|CAB81831.1\| putative protein [Arabidopsis thaliana] gb\|ABD91496.1\| At3g60450 [Arabidopsis thaliana] gb\|AEE80063.1\| phosphoglycerate mutase-like protein [Arabidopsis thaliana]	-	-	1.0e-13	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%

Source	Gene names
Sma3	GSVIVT00019130001; POPTRDRAFT_551987; POPTRDRAFT_918588; RCOM_1609120; prib5;

Source	InterPros	Term	Type	Identity
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	PRIB5	IPR012398	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G60450.1	Phosphoglycerate mutase family protein chr3:22340982-22342187 FORWARD LENGTH=274	1.0e-18	48%
RefSeq	Arabidopsis thaliana	NP_191604.1	phosphoglycerate mutase-like protein [Arabidopsis thaliana]	1.0e-18	48%
RefSeq	Populus trichocarpa	XP_002302509.1	predicted protein [Populus trichocarpa]	4.0e-21	52%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPK4

Fln msg: your sequence is shorter than subject: 89 - 317

Fln protein: RYSKTIQALADKFPQENVLVTHGEGVGVSVSTFKKDVIVHAVEYCAYSHSQRSIFGPSTNGLNTEKFHVLTESGQSGIRFITSKKFME*

Protein Length: 90

Fln nts: AGATACTCAAAAACGATTCAAGCACTGGCAGATAAATTTCCACAAGAGAATGTTCTTGTTACTCATGGTGAAGGTGTTGGAGTTTCAGTTTCTACATTTAAAAAGGATGTAATTGTTCACGCAGTAGAATATTGTGCGTATTCTCACTCTCAGAGATCCATCTTTGGCCCTTCAACAAATGGGCTGAATACTGAAAAGTTTCACGTTTTGACAGAATCAGGTCAATCAGGTATTCGATTTATAACAAGTAAAAAATTCATGGAGTAA___TTGTACAAGTGCTATTGTTGTGC

Fln Alignment:

GD4IA4402EMPV0___RYSKTIQALADKFPQENVL-VTHGEGVGVSVSTFKKDVIVHAVEYCAYSHSQRSIFGPSTNGLNTEKFHVLTESGQSGIRF
A9NPK4_______________RYSKAIQALADKFPRENVLCVTHGEGVGVSVSAFKKDVIVNAVEYCAYSHSQRSIFGSSTDGLNAERFHVLTESDQSGIRF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain