SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene76230

Length: 191 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene76230
TTTCCACCACAGTGAGAAGCTGGCAATTGCATTTGCACTTGTCAACACACCATCTGGGGCAGTTATTCGCGTTATCAAGAATCTCCGTGTTTGTGGTGACTGCCACTCTGCCATCAAGTTCATCTCCAAGATTGTTGAACGAGAGATTATTGTAAGGGATGTTAATCGTTACCATCATTTCAAAGACGGAC

Ace file of the UniGene sp_v3.0_unigene76230 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Pinus nigra RepID=B3U1V3_9CONI	-	-	7.0e-24	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Pentatricopeptide repeat protein	-	-	0.0	-

Source	Gene names
Sma3	At1g20230; At1g47580; At1g56690; At2g22070; At3g02010; At3g23330; At3g24000; At3g26782; At3g49170; At3g57430; At3g62890; At4g16835; At4g33170; At4g33990; At5g16860; B1032F05.19; B1080A02.28; B1130E07.12; DYW10; EMB2261; EMB2758; F14O13.19; F16N3.14; F17I5

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	acireductone synthase activity	GO:0043874	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	DNA methylation	GO:0006306	Biological Process	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	L-methionine salvage from methylthioadenosine	GO:0019509	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Ribosomal protein S3, C-terminal	IPR001351	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	MAP kinase, conserved site	IPR003527	-	-
Sma3	K Homology domain, type 2	IPR004044	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	2,3-diketo-5-methylthio-1-phosphopentane phosphatase	IPR010041	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3		IPR017442	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G47580.1	Pentatricopeptide repeat (PPR) superfamily protein chr1:17485668-17486387 FORWARD LENGTH=239	1.0e-26	67%
RefSeq	Arabidopsis thaliana	NP_175189.2	putative lipoyltransferase [Arabidopsis thaliana]	2.0e-26	67%
RefSeq	Populus trichocarpa	XP_002308737.1	predicted protein [Populus trichocarpa]	3.0e-28	74%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: STOP codon was not found. Distance to subject end: 8 aas, your sequence is shorter than subject: 63 - 246

Fln protein: FHHSEKLAIAFALVNTPSGAVIRVIKNLRVCGDCHSAIKFISKIVEREIIVRDVNRYHHFKDG

Protein Length: 64

Fln nts: TTTCCACCACAGTGAGAAGCTGGCAATTGCATTTGCACTTGTCAACACACCATCTGGGGCAGTTATTCGCGTTATCAAGAATCTCCGTGTTTGTGGTGACTGCCACTCTGCCATCAAGTTCATCTCCAAGATTGTTGAACGAGAGATTATTGTAAGGGATGTTAATCGTTACCATCATTTCAAAGACGGAC

Fln Alignment:

GD4IA4402D1KVV___FHHSEKLAIAFALVNTPSGAVIRVIKNLRVCGDCHSAIKFISKIVEREIIVRDVNRYHHFKDG
D5AAE0_______________YHHSEKLAIAFGLISTLPGLPVRIIKNLRVCGDCHTATKFISKIVEREIIIRDANRFHHFKDG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain