SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75603

Length: 126 nt

UniGene Fasta

>sp_v3.0_unigene75603
GTGGTGGCAATAAACGCAAGTTATCAGTGGCCATAGCAATGATTGGAGATCCTCCTCTCGTCATTTTAGATGAACCTTCAACGGGTCCATACTGAAAGCGATTTATGTGGGATGTCATCTCACGTA

Ace file of the UniGene sp_v3.0_unigene75603

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABC transporter A family member 1 n=1 Tax=Arabidopsis thaliana RepID=F4IKZ5_ARATH	-	-	2.0e-12	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	ATP-binding cassette superfamily	-	-	5.841e-06	-

Source	Gene names
Sma3	At2g41700; GSVIVT00025613001; MICPUCDRAFT_30374; MICPUN_57369; OSTLU_42103; Ot18g01460; POPTRDRAFT_831828; PtrAOH1; RCOM_1216160; abca1;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G41700.1	ABCA1, AtABCA1 ATP-binding cassette A1 chr2:17383239-17396110 REVERSE LENGTH=1882	3.0e-17	88%
RefSeq	Arabidopsis thaliana	NP_001031526.1	ABC transporter A family member 1 [Arabidopsis thaliana]	4.0e-17	88%
RefSeq	Populus trichocarpa	XP_002308937.1	ABC transporter family, cholesterol/phospholipid flippase [Populus trichocarpa]	1.0e-16	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRA1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 272 aas, your sequence is shorter than subject: 31 - 788

Fln protein: GGNKRKLSVAIAMIGDPPLVILDEPSTGPY*

Protein Length: 32

Fln nts: GTGGTGGCAATAAACGCAAGTTATCAGTGGCCATAGCAATGATTGGAGATCCTCCTCTCGTCATTTTAGATGAACCTTCAACGGGTCCATACTGAAAGCGATTTATGTGGGATGTCATCTCACGTA

Fln Alignment:

GD4IA4402EODSR___GGNKRKLSVAIAMIGDPPLVILDEPSTG--PY*KRFMWDVI
C0PRA1_______________GGMKRRLSVAIALIGDPKLVFLDEPTTGMDPVTRRYVWDII

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain